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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：4/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Towards interpretable imaging genomics analysis: Methodological developments and applications 期刊论文
INFORMATION FUSION, 2024, 卷号: 102, 页码: 18
作者:  Cen, Xiaoping;  Dong, Wei;  Lv, Wei;  Zhao, Yi;  Dubee, Fred;  Mentis, Alexios-Fotios A.;  Jovic, Dragomirka;  Yang, Huanming;  Li, Yixue
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Interpretability  Imaging genomics  Genotype -phenotype association  Precision medicine  
Streamlining spatial omics data analysis with Pysodb 期刊论文
NATURE PROTOCOLS, 2023, 页码: 72
作者:  Lin, Senlin;  Zhao, Fangyuan;  Wu, Zihan;  Yao, Jianhua;  Zhao, Yi;  Yuan, Zhiyuan
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
piRBase: integrating piRNA annotation in all aspects 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D265-D272
作者:  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Ying, Zhiye;  Yu, Haopeng;  Li, Yanyan;  Zhao, Yi;  Zeng, Xiaoxi;  He, Shunmin;  Chen, Runsheng
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
Transcriptome landscape of double negative T cells by single-cell RNA sequencing 期刊论文
JOURNAL OF AUTOIMMUNITY, 2021, 卷号: 121, 页码: 15
作者:  Yang, Lu;  Zhu, Yanbing;  Tian, Dan;  Wang, Song;  Guo, Jincheng;  Sun, Guangyong;  Jin, Hua;  Zhang, Chunpan;  Shi, Wen;  Gershwin, M. Eric;  Zhang, Zhongtao;  Zhao, Yi;  Zhang, Dong
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Double negative T cell  Single-cell RNA sequencing  Unconventional T cells  Inflammation  Regulatory T cells  Innate immunity  
DeepOmix: A scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 2719-2725
作者:  Zhao, Lianhe;  Dong, Qiongye;  Luo, Chunlong;  Wu, Yang;  Bu, Dechao;  Qi, Xiaoning;  Luo, Yufan;  Zhao, Yi
收藏  |  浏览/下载：43/0  |  提交时间：2021/12/01
Multi-omics  Deep learning  Survival analysis  Prognosis prediction  Interpretable model  
A P53-related microRNA model for predicting the prognosis of hepatocellular carcinoma patients 期刊论文
JOURNAL OF CELLULAR PHYSIOLOGY, 2019, 页码: 10
作者:  Fang, Shuang-Sang;  Guo, Jin-Cheng;  Zhang, Jian-Hua;  Liu, Jin-Na;  Hong, Shuai;  Yu, Bo;  Gao, Yuhan;  Hu, Su-Pei;  Liu, Hai-Zhong;  Sun, Liang;  Zhao, Yi
收藏  |  浏览/下载：78/0  |  提交时间：2019/12/10
hepatocellular carcinoma  microRNA  prognostic model  survival  
CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation 期刊论文
FEBS LETTERS, 2019, 卷号: 593, 期号: 11, 页码: 1179-1189
作者:  Li, Lin;  Bu, Dechao;  Zhao, Yi
收藏  |  浏览/下载：275/0  |  提交时间：2019/08/16
abundance  circRNA  circRNAwrap  detection  transcript