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Self-supervised noise modeling and sparsity guided electron tomography volumetric image denoising 期刊论文
ULTRAMICROSCOPY, 2024, 卷号: 255, 页码: 11
作者:  Yang, Zhidong;  Zang, Dawei;  Li, Hongjia;  Zhang, Zhao;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载：11/0  |  提交时间：2024/05/20
Electron tomography  Image denoising  Self-supervised learning  
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 卷号: 19, 期号: 1, 页码: 209-219
作者:  Gao, Shan;  Han, Renmin;  Zeng, Xiangrui;  Liu, Zhiyong;  Xu, Min;  Zhang, Fa
收藏  |  浏览/下载：24/0  |  提交时间：2022/12/07
Cryo-electron tomography  image classification  convolution neural network  
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 页码: 19
作者:  Li, Lun;  Han, Renmin;  Zhang, Zhaotian;  Guo, Tiande;  Liu, Zhiyong;  Zhang, Fa
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
Electron tomography  Compressed sensing  Matching pursuit  Iterative reconstruction-reprojection  
SHREC 2020: Classification in cryo-electron tomograms 期刊论文
COMPUTERS & GRAPHICS-UK, 2020, 卷号: 91, 页码: 279-289
作者:  Gubins, Ilja;  Chaillet, Marten L.;  van der Schot, Gijs;  Veltkamp, Remco C.;  Forster, Friedrich;  Hao, Yu;  Wan, Xiaohua;  Cui, Xuefeng;  Zhang, Fa;  Moebel, Emmanuel;  Wang, Xiao;  Kihara, Daisuke;  Zeng, Xiangrui;  Xu, Min;  Nguyen, Nguyen P.;  White, Tommi;  Bunyak, Filiz
收藏  |  浏览/下载：66/0  |  提交时间：2020/12/10
Cryo-electron tomography  Computer vision  Pattern recognition  Protein classification  Benchmark  
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：78/0  |  提交时间：2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2017, 页码: 12
作者:  Wang, Zihao;  Chen, Yu;  Zhang, Jingrong;  Li, Lun;  Wan, Xiaohua;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：67/0  |  提交时间：2019/12/10
electron tomography  hybrid task allocation strategy  ICON  MIC acceleration  parallel NUFFT  Tianhe-2 supercomputer  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：59/0  |  提交时间：2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 198, 期号: 2, 页码: 103-115
作者:  Wan, Xiaohua;  Katchalski, Tsvi;  Churas, Christopher;  Ghosh, Sreya;  Phan, Sebastien;  Lawrence, Albert;  Hao, Yu;  Zhou, Ziying;  Chen, Ruijuan;  Chen, Yu;  Zhang, Fa;  Ellisman, Mark H.
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12
Electron  Microscope  Tomography  Simulator  Tilt  Series  Reconstruction  Tracking  Alignment  Block face  Inversion  Curvilinear  Warping  
ICON: 3D reconstruction with 'missing-information' restoration in biological electron tomography 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 100-112
作者:  Deng, Yuchen;  Chen, Yu;  Zhang, Yan;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载：57/0  |  提交时间：2019/12/13
Compressed sensing  Electron tomography  Missing wedge  NUFFT  Sub-tomogram averaging  
FIRT: Filtered iterative reconstruction technique with information restoration 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 49-61
作者:  Chen, Yu;  Zhang, Yan;  Zhang, Kai;  Deng, Yuchen;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载：60/0  |  提交时间：2019/12/13
Algebra reconstruction technique  Electron tomography  Filtered iterative reconstruction technique  Information restoration  Nonlinear diffusion filter