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GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model 期刊论文
CELL RESEARCH, 2024, 页码: 16
作者:  Yang, Xiaodong;  Liu, Guole;  Feng, Guihai;  Bu, Dechao;  Wang, Pengfei;  Jiang, Jie;  Chen, Shubai;  Yang, Qinmeng;  Miao, Hefan;  Zhang, Yiyang;  Man, Zhenpeng;  Liang, Zhongming;  Wang, Zichen;  Li, Yaning;  Li, Zheng;  Liu, Yana;  Tian, Yao;  Liu, Wenhao;  Li, Cong;  Li, Ao;  Dong, Jingxi;  Hu, Zhilong;  Fang, Chen;  Cui, Lina;  Deng, Zixu;  Jiang, Haiping;  Cui, Wentao;  Zhang, Jiahao;  Yang, Zhaohui;  Li, Handong;  He, Xingjian;  Zhong, Liqun;  Zhou, Jiaheng;  Wang, Zijian;  Long, Qingqing;  Xu, Ping;  Wang, Hongmei;  Meng, Zhen;  Wang, Xuezhi;  Wang, Yangang;  Wang, Yong;  Zhang, Shihua;  Guo, Jingtao;  Zhao, Yi;  Zhou, Yuanchun;  Li, Fei;  Liu, Jing;  Chen, Yiqiang;  Yang, Ge;  Li, Xin
收藏  |  浏览/下载:4/0  |  提交时间:2024/12/06
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms (vol 20, pg 446, 2022) 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 卷号: 22, 期号: 1, 页码: 1
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载:6/0  |  提交时间:2024/12/06
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载:22/0  |  提交时间:2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
TripleBrain: A Compact Neuromorphic Hardware Core With Fast On-Chip Self-Organizing and Reinforcement Spike-Timing Dependent Plasticity 期刊论文
IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS, 2022, 卷号: 16, 期号: 4, 页码: 636-650
作者:  Wang, Haibing;  He, Zhen;  Wang, Tengxiao;  He, Junxian;  Zhou, Xichuan;  Wang, Ying;  Liu, Liyuan;  Wu, Nanjian;  Tian, Min;  Shi, Cong
收藏  |  浏览/下载:22/0  |  提交时间:2023/07/12
Neurons  Neuromorphics  Hardware  System-on-chip  Field programmable gate arrays  Synapses  Self-organizing feature maps  Neuromorphic system  spiking neural network  spike-timing dependent plasticity  self-organizing map  reinforce- ment learning  on-chip learning  
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载:24/0  |  提交时间:2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758
作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min
收藏  |  浏览/下载:29/0  |  提交时间:2022/12/07
cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry  
A Low-Cost FPGA Implementation of Spiking Extreme Learning Machine With On-Chip Reward-Modulated STDP Learning 期刊论文
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS II-EXPRESS BRIEFS, 2022, 卷号: 69, 期号: 3, 页码: 1657-1661
作者:  He, Zhen;  Shi, Cong;  Wang, Tengxiao;  Wang, Ying;  Tian, Min;  Zhou, Xichuan;  Li, Ping;  Liu, Liyuan;  Wu, Nanjian;  Luo, Gang
收藏  |  浏览/下载:33/0  |  提交时间:2022/12/07
Neurons  Hardware  System-on-chip  Costs  Training  Field programmable gate arrays  Computational modeling  Neuromorphic computing  spiking neural network  extreme learning machine  spike-timing-dependent plasticity  reward-modulated  on-chip learning  
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载:48/0  |  提交时间:2021/12/01
cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning  
Sequential Recommendation via Cross-Domain Novelty Seeking Trait Mining 期刊论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2020, 卷号: 35, 期号: 2, 页码: 305-319
作者:  Zhuang, Fu-Zhen;  Zhou, Ying-Min;  Ying, Hao-Chao;  Zhang, Fu-Zheng;  Ao, Xiang;  Xie, Xing;  He, Qing;  Xiong, Hui
收藏  |  浏览/下载:45/0  |  提交时间:2020/12/10
sequential recommendation  novelty-seeking trait  transfer learning  
CMTTdb: the cancer molecular targeted therapy database 期刊论文
ANNALS OF TRANSLATIONAL MEDICINE, 2019, 卷号: 7, 期号: 22, 页码: 7
作者:  Bai, Xue;  Yang, Xiaobo;  Wu, Liangcai;  Zuo, Bangyou;  Lin, Jianzhen;  Wang, Shanshan;  Bian, Jin;  Sang, Xinting;  He, Yungang;  Yang, Zhen;  Zhao, Haitao
收藏  |  浏览/下载:52/0  |  提交时间:2020/12/10
Molecular-targeted therapy  clinical trial  cancer  database