中国科学院计算技术研究所机构知识库

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	Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA 期刊论文 NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 9 作者:  Cheng, Jing;  Liu, Tong;  You, Xin;  Zhang, Fa;  Sui, Sen-Fang;  Wan, Xiaohua;  Zhang, Xinzheng 收藏  |  浏览/下载：6/0  |  提交时间：2023/12/04
	Improving protein structure prediction using templates and sequence embedding 期刊论文 BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8 作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：6/0  |  提交时间：2023/12/04
	Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758 作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min 收藏  |  浏览/下载：16/0  |  提交时间：2022/12/07 cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry
	Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文 FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13 作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction
	Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996 作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：16/0  |  提交时间：2022/12/07
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：16/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	An Integrated Deep Learning and Molecular Dynamics Simulation-Based Screening Pipeline Identifies Inhibitors of a New Cancer Drug Target TIPE2 期刊论文 FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13 作者:  Zhang, Haiping;  Li, Junxin;  Saravanan, Konda Mani;  Wu, Hao;  Wang, Zhichao;  Wu, Du;  Wei, Yanjie;  Lu, Zhen;  Chen, Youhai H.;  Wan, Xiaochun;  Pan, Yi 收藏  |  浏览/下载：26/0  |  提交时间：2022/06/21 TIPE2  UM-164  virtual screening  deep learning  molecular dynamics simulation
	FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文 BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01 Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service
	COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization 期刊论文 MEMBRANES, 2021, 卷号: 11, 期号: 7, 页码: 21 作者:  Reza, Md Selim;  Zhang, Huiling;  Hossain, Md Tofazzal;  Jin, Langxi;  Feng, Shengzhong;  Wei, Yanjie 收藏  |  浏览/下载：34/0  |  提交时间：2021/12/01 protein residue-residue contact  contact prediction  mixed integer linear programming  machine learning  protein sequence
	CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文 NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9 作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：33/0  |  提交时间：2021/12/01