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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载:4/0  |  提交时间:2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Benchmarking spatial clustering methods with spatially resolved transcriptomics data 期刊论文
NATURE METHODS, 2024, 页码: 25
作者:  Yuan, Zhiyuan;  Zhao, Fangyuan;  Lin, Senlin;  Zhao, Yu;  Yao, Jianhua;  Cui, Yan;  Zhang, Xiao-Yong;  Zhao, Yi
收藏  |  浏览/下载:3/0  |  提交时间:2024/05/20
MarkerDetector: A method for robust fiducial marker detection in electron micrographs using wavelet-based template 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2024, 卷号: 216, 期号: 1, 页码: 13
作者:  Hou, Gaoxin;  Yang, Zhidong;  Zang, Dawei;  Fernandez, Jose-Jesus;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Electron microscopy  Wavelet transform  Template matching  Fiducial marker detection  
Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 卷号: 28, 期号: 1, 页码: 7-18
作者:  Yan, Rui;  Lv, Zhilong;  Yang, Zhidong;  Lin, Senlin;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Hierarchical representation  pathological image analysis  sparse transformer  survival analysis  
Streamlining spatial omics data analysis with Pysodb 期刊论文
NATURE PROTOCOLS, 2023, 页码: 72
作者:  Lin, Senlin;  Zhao, Fangyuan;  Wu, Zihan;  Yao, Jianhua;  Zhao, Yi;  Yuan, Zhiyuan
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Maritime greenhouse gas emission estimation and forecasting through AIS data analytics: a case study of Tianjin port in the context of sustainable development 期刊论文
FRONTIERS IN MARINE SCIENCE, 2023, 卷号: 10, 页码: 17
作者:  Xie, Wenxin;  Li, Yong;  Yang, Yang;  Wang, Peng;  Wang, Zhishan;  Li, Zhaoxuan;  Mei, Qiang;  Sun, Yaqi
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
greenhouse gas  emission inventory  AIS  transformer  emission prediction  
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载:6/0  |  提交时间:2024/05/20
Deep learning  protein structure prediction  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载:9/0  |  提交时间:2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
ESA: An efficient sequence alignment algorithm for biological database search on Sunway TaihuLight 期刊论文
PARALLEL COMPUTING, 2023, 卷号: 117, 页码: 11
作者:  Zhang, Hao;  Huang, Zhiyi;  Chen, Yawen;  Liang, Jianguo;  Gao, Xiran
收藏  |  浏览/下载:8/0  |  提交时间:2023/12/04
Hybrid sequence alignment  Biological database search  Sunway TaihuLight  SW26010  Heterogeneous architecture