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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：4/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials 期刊论文
COMMUNICATIONS BIOLOGY, 2024, 卷号: 7, 期号: 1, 页码: 13
作者:  Gong, Tiansu;  Ju, Fusong;  Bu, Dongbo
收藏  |  浏览/下载：3/0  |  提交时间：2024/05/20
RPTOR blockade suppresses brain metastases of NSCLC by interfering the ceramide metabolism via hijacking YY1 binding 期刊论文
JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 2024, 卷号: 43, 期号: 1, 页码: 15
作者:  Lin, Ying;  Wu, Yun;  Zhang, Qiangzu;  Tu, Xunwei;  Chen, Sufang;  Pan, Junfan;  Xu, Nengluan;  Lin, Ming;  She, Peiwei;  Niu, Gang;  Chen, Yusheng;  Li, Hongru
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
Non-small cell lung cancer  Brain metastasis  RPTOR  SPHK2  S1P  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：9/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
Editorial: Computational solutions for microbiome and metagenomics sequencing analyses, Volume II 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Niyogisubizo, Jovial;  Cai, Yunpeng;  Zhang, Lu;  Zhang, Xingyu;  Wei, Yanjie
收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04
gut microbiota  circular RNA biomarkers  metagenomics sequencing  COVID-19  feature selection  machine learning  immune markers  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
NPInter v5.0: ncRNA interaction database in a new era 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 页码: 8
作者:  Zheng, Yu;  Luo, Huaxia;  Teng, Xueyi;  Hao, Xinpei;  Yan, Xiaoyu;  Tang, Yiheng;  Zhang, Wanyu;  Wang, Yuanxin;  Zhang, Peng;  Li, Yanyan;  Zhao, Yi;  Chen, Runsheng;  He, Shunmin
收藏  |  浏览/下载：16/0  |  提交时间：2023/07/12
Vimentin binds to a novel tumor suppressor protein, GSPT1-238aa, encoded by circGSPT1 with a selective encoding priority to halt autophagy in gastric carcinoma 期刊论文
CANCER LETTERS, 2022, 卷号: 545, 页码: 14
作者:  Hu, Fan;  Peng, Yin;  Chang, Shanshan;  Luo, Xiaonuan;  Yuan, Yuan;  Zhu, Xiaohui;  Xu, Yidan;  Du, Kaining;  Chen, Yang;  Deng, Shiqi;  Yu, Fan;  Feng, Xianling;  Fan, Xinmin;  Ashktorab, Hassan;  Smoot, Duane;  Meltzer, Stephen J.;  Li, Song;  Wei, Yanjie;  Zhang, Xiaojing;  Jin, Zhe
收藏  |  浏览/下载：29/0  |  提交时间：2022/12/07
Circular RNAs  circGSPT1  Autophagy  Translation  Gastric cancer