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Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA 期刊论文
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 9
作者:  Cheng, Jing;  Liu, Tong;  You, Xin;  Zhang, Fa;  Sui, Sen-Fang;  Wan, Xiaohua;  Zhang, Xinzheng
收藏  |  浏览/下载:7/0  |  提交时间:2023/12/04
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14
作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa
收藏  |  浏览/下载:13/0  |  提交时间:2023/07/12
Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks  
SHREC 2020: Classification in cryo-electron tomograms 期刊论文
COMPUTERS & GRAPHICS-UK, 2020, 卷号: 91, 页码: 279-289
作者:  Gubins, Ilja;  Chaillet, Marten L.;  van der Schot, Gijs;  Veltkamp, Remco C.;  Forster, Friedrich;  Hao, Yu;  Wan, Xiaohua;  Cui, Xuefeng;  Zhang, Fa;  Moebel, Emmanuel;  Wang, Xiao;  Kihara, Daisuke;  Zeng, Xiangrui;  Xu, Min;  Nguyen, Nguyen P.;  White, Tommi;  Bunyak, Filiz
收藏  |  浏览/下载:55/0  |  提交时间:2020/12/10
Cryo-electron tomography  Computer vision  Pattern recognition  Protein classification  Benchmark  
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2019, 页码: 11
作者:  Wang, Zihao;  Zhang, Jingrong;  Gao, Weifang;  Liu, Zhiyong;  Wan, Xiaohua;  Zhang, Fa
收藏  |  浏览/下载:45/0  |  提交时间:2020/12/10
consensus optimization  cryoelectron tomography  multiple-tilt reconstruction  parallel computing  TxBR  
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 2, 页码: 319-328
作者:  Han, Renmin;  Wan, Xiaohua;  Li, Lun;  Lawrence, Albert;  Yang, Peng;  Li, Yu;  Wang, Sheng;  Sun, Fei;  Liu, Zhiyong;  Gao, Xin;  Zhang, Fa
收藏  |  浏览/下载:73/0  |  提交时间:2019/04/03
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:70/0  |  提交时间:2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2017, 页码: 12
作者:  Wang, Zihao;  Chen, Yu;  Zhang, Jingrong;  Li, Lun;  Wan, Xiaohua;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:60/0  |  提交时间:2019/12/10
electron tomography  hybrid task allocation strategy  ICON  MIC acceleration  parallel NUFFT  Tianhe-2 supercomputer  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:52/0  |  提交时间:2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 198, 期号: 2, 页码: 103-115
作者:  Wan, Xiaohua;  Katchalski, Tsvi;  Churas, Christopher;  Ghosh, Sreya;  Phan, Sebastien;  Lawrence, Albert;  Hao, Yu;  Zhou, Ziying;  Chen, Ruijuan;  Chen, Yu;  Zhang, Fa;  Ellisman, Mark H.
收藏  |  浏览/下载:57/0  |  提交时间:2019/12/12
Electron  Microscope  Tomography  Simulator  Tilt  Series  Reconstruction  Tracking  Alignment  Block face  Inversion  Curvilinear  Warping  
FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter 期刊论文
BIO-MEDICAL MATERIALS AND ENGINEERING, 2015, 卷号: 26, 页码: S1409-S1415
作者:  Zhou, Ziying;  Li, Yugang;  Zhang, Fa;  Wan, Xiaohua
收藏  |  浏览/下载:42/0  |  提交时间:2019/12/13
electron tomography (ET)  3D reconstruction  iterative method  non-linear anisotropic diffusion (NAD) filter