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Streamlining spatial omics data analysis with Pysodb 期刊论文
NATURE PROTOCOLS, 2023, 页码: 72
作者:  Lin, Senlin;  Zhao, Fangyuan;  Wu, Zihan;  Yao, Jianhua;  Zhao, Yi;  Yuan, Zhiyuan
收藏  |  浏览/下载：7/0  |  提交时间：2024/05/20
Maritime greenhouse gas emission estimation and forecasting through AIS data analytics: a case study of Tianjin port in the context of sustainable development 期刊论文
FRONTIERS IN MARINE SCIENCE, 2023, 卷号: 10, 页码: 17
作者:  Xie, Wenxin;  Li, Yong;  Yang, Yang;  Wang, Peng;  Wang, Zhishan;  Li, Zhaoxuan;  Mei, Qiang;  Sun, Yaqi
收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20
greenhouse gas  emission inventory  AIS  transformer  emission prediction  
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：18/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：24/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载：8/0  |  提交时间：2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
ESA: An efficient sequence alignment algorithm for biological database search on Sunway TaihuLight 期刊论文
PARALLEL COMPUTING, 2023, 卷号: 117, 页码: 11
作者:  Zhang, Hao;  Huang, Zhiyi;  Chen, Yawen;  Liang, Jianguo;  Gao, Xiran
收藏  |  浏览/下载：12/0  |  提交时间：2023/12/04
Hybrid sequence alignment  Biological database search  Sunway TaihuLight  SW26010  Heterogeneous architecture  
Editorial: Computational solutions for microbiome and metagenomics sequencing analyses, Volume II 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Niyogisubizo, Jovial;  Cai, Yunpeng;  Zhang, Lu;  Zhang, Xingyu;  Wei, Yanjie
收藏  |  浏览/下载：12/0  |  提交时间：2023/12/04
gut microbiota  circular RNA biomarkers  metagenomics sequencing  COVID-19  feature selection  machine learning  immune markers  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：12/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载：13/0  |  提交时间：2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
Validation Methods of Peptide Identification Results in Proteomics* 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min
收藏  |  浏览/下载：12/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods