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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：4/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Benchmarking spatial clustering methods with spatially resolved transcriptomics data 期刊论文
NATURE METHODS, 2024, 页码: 25
作者:  Yuan, Zhiyuan;  Zhao, Fangyuan;  Lin, Senlin;  Zhao, Yu;  Yao, Jianhua;  Cui, Yan;  Zhang, Xiao-Yong;  Zhao, Yi
收藏  |  浏览/下载：3/0  |  提交时间：2024/05/20
Optical Genome Mapping Reveals the Landscape of Structural Variations and Their Clinical Significance in HBOC-Related Breast Cancer 期刊论文
FRONTIERS IN BIOSCIENCE-LANDMARK, 2024, 卷号: 29, 期号: 1, 页码: 1-15
作者:  Cheng, Yanan;  Dong, Li;  Bu, Dechao;  Han, Lei;  Zhao, Yi;  Liu, Juntian;  Guo, Xiaojing;  Xu, Hanli;  Yu, Jinpu
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
HBOC  breast cancer  optical genome mapping  structural variation  BRCA1/2  chromothripsis  
Streamlining spatial omics data analysis with Pysodb 期刊论文
NATURE PROTOCOLS, 2023, 页码: 72
作者:  Lin, Senlin;  Zhao, Fangyuan;  Wu, Zihan;  Yao, Jianhua;  Zhao, Yi;  Yuan, Zhiyuan
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
Local Feature Matters: Cascade Multi-Scale MLP for Edge Segmentation of Medical Images 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2023, 卷号: 22, 期号: 4, 页码: 828-835
作者:  Lv, Jinkai;  Hu, Yuyong;  Fu, Quanshui;  Hu, Yuqiang;  Lv, Lin;  Yang, Guoqing;  Li, Jinpeng;  Zhao, Yi
收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04
MLP  medical image segmentation  semantic segmentation  
Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文
JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134
作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
piRBase: integrating piRNA annotation in all aspects 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D265-D272
作者:  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Ying, Zhiye;  Yu, Haopeng;  Li, Yanyan;  Zhao, Yi;  Zeng, Xiaoxi;  He, Shunmin;  Chen, Runsheng
收藏  |  浏览/下载：22/0  |  提交时间：2022/12/07