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PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 3, 页码: 480-491
作者:  Ma, Ke;  Li, Jiawei;  Zhao, Mengyuan;  Zamit, Ibrahim;  Lin, Bin;  Guo, Fei;  Tang, Jijun
收藏  |  浏览/下载：1/0  |  提交时间：2024/12/06
DNA  Proteins  Organisms  Biology  Proteomics  Gene expression  Feature extraction  Transcription factor  TF-target gene interactions  DNA sequence  graph neural network  personalized PageRank  
Validation Methods of Peptide Identification Results in Proteomics* 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min
收藏  |  浏览/下载：16/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：36/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
蛋白质组学肽段鉴定可信度评价方法 期刊论文
生物化学与生物物理进展, 2023, 卷号: 50, 期号: 1, 页码: 109
作者:  周文婧;  曾文锋;  迟浩;  贺思敏
收藏  |  浏览/下载：11/0  |  提交时间：2024/05/20
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  蛋白质组学  质谱分析  目标-诱饵库方法  假发现率  可信度评价方法  
Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758
作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min
收藏  |  浏览/下载：29/0  |  提交时间：2022/12/07
cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry  
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：41/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
O-GlcNAcylation Quantification Based on Electron-Transfer/Higher-Energy Collisional Dissociation and Its Application in O-GlcNAcylation Site Mapping of Liver Proteomics in High Fat Diet-fed Mice 期刊论文
CHINESE JOURNAL OF ANALYTICAL CHEMISTRY, 2021, 卷号: 49, 期号: 12, 页码: 11
作者:  Shao Wen-Ya;  Liang Yu;  Liu Jian-Xi;  Liu Hong-Tao;  Wang Zhao-Wei;  Sui Zhi-Gang;  Zhao Bao-Feng;  Zhang Xiao-Dan;  Liang Zhen;  Zhang Li-Hua;  Zhang Yu-Kui
收藏  |  浏览/下载：28/0  |  提交时间：2022/12/07
O-linked beta-N-acetylglucosaminylation  Quantitative proteomics  Electron transfer/higher energy collision dissociation  
Deep Learning in Proteomics 期刊论文
PROTEOMICS, 2020, 页码: 21
作者:  Wen, Bo;  Zeng, Wen-Feng;  Liao, Yuxing;  Shi, Zhiao;  Savage, Sara R.;  Jiang, Wen;  Zhang, Bing
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
bioinformatics  deep learning  proteomics  
GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文
PROTEOMICS, 2020, 页码: 9
作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao
收藏  |  浏览/下载：62/0  |  提交时间：2020/12/10
cooperative game  deep learning  proteomics  sequence tag generation  
Synergistic optimization of Liquid Chromatography and Mass Spectrometry parameters on Orbitrap Tribrid mass spectrometer for high efficient data-dependent proteomics 期刊论文
JOURNAL OF MASS SPECTROMETRY, 2020, 页码: 10
作者:  Huang, Peiwu;  Liu, Chao;  Gao, Weina;  Chu, Bizhu;  Cai, Zongwei;  Tian, Ruijun
收藏  |  浏览/下载：73/0  |  提交时间：2020/12/10
chromatography  data-dependent acquisition  label-free proteomics  mass spectrometry  precursor determination algorithm