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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：16/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Editorial: Computational solutions for microbiome and metagenomics sequencing analyses, Volume II 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Niyogisubizo, Jovial;  Cai, Yunpeng;  Zhang, Lu;  Zhang, Xingyu;  Wei, Yanjie
收藏  |  浏览/下载：16/0  |  提交时间：2023/12/04
gut microbiota  circular RNA biomarkers  metagenomics sequencing  COVID-19  feature selection  machine learning  immune markers  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：15/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15
作者:  Hossain, Md. Tofazzal;  Zhang, Jingjing;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：29/0  |  提交时间：2022/12/07
circular RNA  reconstruction of circRNA sequence  full-length sequence  
Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：28/0  |  提交时间：2022/12/07
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：37/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
Transcriptome landscape of double negative T cells by single-cell RNA sequencing 期刊论文
JOURNAL OF AUTOIMMUNITY, 2021, 卷号: 121, 页码: 15
作者:  Yang, Lu;  Zhu, Yanbing;  Tian, Dan;  Wang, Song;  Guo, Jincheng;  Sun, Guangyong;  Jin, Hua;  Zhang, Chunpan;  Shi, Wen;  Gershwin, M. Eric;  Zhang, Zhongtao;  Zhao, Yi;  Zhang, Dong
收藏  |  浏览/下载：49/0  |  提交时间：2021/12/01
Double negative T cell  Single-cell RNA sequencing  Unconventional T cells  Inflammation  Regulatory T cells  Innate immunity  
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 卷号: 19, 期号: 3, 页码: 377-393
作者:  Luo, Haitao;  Bu, Dechao;  Shao, Lijuan;  Li, Yang;  Sun, Liang;  Wang, Ce;  Wang, Jing;  Yang, Wei;  Yang, Xiaofei;  Dong, Jun;  Zhao, Yi;  Li, Furong
收藏  |  浏览/下载：31/0  |  提交时间：2022/12/07
Long non-coding RNA  Transcriptome assembly  Metacell  Immune regulation  Functional annotation  
Editorial: Computational Learning Models and Methods Driven by Omics for Precision Medicine 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 4
作者:  Zhu, Lei;  Cai, Hongmin;  Zhang, Fa;  Zou, Quan;  Wei, Yanjie;  Zheng, Huiru
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
omics  machine learning  drug  RNA  disease  biomarker  network analysis  deep learning  
Transcriptomic analysis of glioblastoma multiforme providing new insights into GPR17 signaling communication 期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2020, 页码: 14
作者:  Mutharasu, Gnanavel;  Murugesan, Akshaya;  Konda Mani, Saravanan;  Yli-Harja, Olli;  Kandhavelu, Meenakshisundaram
收藏  |  浏览/下载：57/0  |  提交时间：2020/12/10
GPR17  signaling networks  glioblastoma multiforme  RNA-Seq  protein–  protein interface  kinases