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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：16/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 3, 页码: 480-491
作者:  Ma, Ke;  Li, Jiawei;  Zhao, Mengyuan;  Zamit, Ibrahim;  Lin, Bin;  Guo, Fei;  Tang, Jijun
收藏  |  浏览/下载：1/0  |  提交时间：2024/12/06
DNA  Proteins  Organisms  Biology  Proteomics  Gene expression  Feature extraction  Transcription factor  TF-target gene interactions  DNA sequence  graph neural network  personalized PageRank  
Deep Collocative Learning for Immunofixation Electrophoresis Image Analysis 期刊论文
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2021, 卷号: 40, 期号: 7, 页码: 1898-1910
作者:  Wei, Xiao-Yong;  Yang, Zhen-Qun;  Zhang, Xu-Lu;  Liao, Ga;  Sheng, Ai-Lin;  Zhou, S. Kevin;  Wu, Yongkang;  Du, Liang
收藏  |  浏览/下载：45/0  |  提交时间：2021/12/01
Tensors  Visualization  Computational modeling  Proteins  Analytical models  Logic gates  Backtracking  Immunofixation Electrophoresis  deep collocative learning  coached attention gates  
Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814
作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping
收藏  |  浏览/下载：49/0  |  提交时间：2021/12/01
Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues  
Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2015, 卷号: 14, 期号: 11, 页码: 4815-4822
作者:  McClatchy, Daniel B.;  Ma, Yuanhui;  Liu, Chao;  Stein, Benjamin D.;  Martinez-Bartolome, Salvador;  Vasquez, Debbie;  Hellberg, Kristina;  Shaw, Reuben J.;  Yates, John R., III
收藏  |  浏览/下载：49/0  |  提交时间：2019/12/13
azidohomoalanine  newly synthesized proteins  proteomics  mass spectrometry  BONCAT  LKB1  quantitation  
Top-down Proteomics: The Large-scale Proteoform Identification 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2015, 卷号: 42, 期号: 2, 页码: 101
作者:  Sun RX(孙瑞祥);  Luo L(罗兰);  Chi H(迟浩);  Liu C(刘超);  He SM(贺思敏)
收藏  |  浏览/下载：14/0  |  提交时间：2023/12/04
DISSOCIATION MASS-SPECTROMETRY  ELECTRON-CAPTURE DISSOCIATION  CHARGED PROTEIN CATIONS  INTACT PROTEINS  BOTTOM-UP  PEPTIDE IDENTIFICATION  MONOCLONAL-ANTIBODIES  STRUCTURAL-ANALYSIS  MEMBRANE-PROTEINS  YEAST PROTEOME  top-down proteomics  tandem mass spectrometry  bioinformatics  protein identification  
Predicting protein function based on modularized protein interaction network 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2006, 卷号: 33, 期号: 5, 页码: 446-451
作者:  Lu, HC;  Shi, QY;  Shi, BC;  Zhang, ZH;  Zhao, Y;  Tang, SQ;  Xiong, L;  Wang, Q;  Chen, RS
收藏  |  浏览/下载：48/0  |  提交时间：2019/12/16
protein-protein interaction network  predicting function of proteins  clustering