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AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 2, 页码: 319-328
作者:  Han, Renmin;  Wan, Xiaohua;  Li, Lun;  Lawrence, Albert;  Yang, Peng;  Li, Yu;  Wang, Sheng;  Sun, Fei;  Liu, Zhiyong;  Gao, Xin;  Zhang, Fa
收藏  |  浏览/下载：81/0  |  提交时间：2019/04/03
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：79/0  |  提交时间：2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 8
作者:  Li, Hui;  Xiao, Li;  Zhang, Lili;  Wu, Jiarui;  Wei, Bin;  Sun, Ninghui;  Zhao, Yi
收藏  |  浏览/下载：72/0  |  提交时间：2019/12/10
smORF  SEP  Ribo-seq  MS  function  
Comprehensive Characterization of the RNA Editomes in Cancer Development and Progression 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 8, 页码: 8
作者:  Luo, Haitao;  Fang, Shuangsang;  Sun, Liang;  Liu, Zhiyong;  Zhao, Yi
收藏  |  浏览/下载：75/0  |  提交时间：2019/12/10
post-transcriptional regulation  RNA editome  tumorigenesis  metastasis  transcriptome  
Computer-Aided Detection of Pulmonary Nodules in Computed Tomography Images: Effect on Observer Performance 期刊论文
JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS, 2017, 卷号: 7, 期号: 6, 页码: 1205-1211
作者:  Liu, JiaBao;  Wang, Yu;  Zhang, Fa;  Ren, Fei;  Liu, LiHeng;  He, Wen
收藏  |  浏览/下载：81/0  |  提交时间：2019/12/12
Computer-Aided Detection  Model Learning  Lung Nodule  Computed Tomography  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：59/0  |  提交时间：2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Identification and function annotation of long intervening noncoding RNAs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2017, 卷号: 18, 期号: 5, 页码: 789-797
作者:  Luo, Haitao;  Bu, Dechao;  Sun, Liang;  Fang, Shuangsang;  Liu, Zhiyong;  Zhao, Yi
收藏  |  浏览/下载：74/0  |  提交时间：2019/12/12
transcriptom sequencing  noncoding RNAs  gene identification  function annotation  network analysis  computational method  
The long non-coding RNA NONHSAG026900 predicts prognosis as a favorable biomarker in patients with diffuse large B-cell lymphoma 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 21, 页码: 34374-34386
作者:  Zhao, Shuangtao;  Fang, Shuangsang;  Liu, Yanhua;  Li, Xixi;  Liao, Shengyou;  Chen, Jinwen;  Liu, Jingjia;  Zhao, Lianhe;  Li, Hui;  Zhou, Wei;  Shen, Wenzhi;  Dong, Xiaoli;  Xiang, Rong;  Wang, Luhua;  Zhao, Yi
收藏  |  浏览/下载：64/0  |  提交时间：2019/12/12
diffuse large B-cell lymphoma  long non-coding RNA  NONHSAG026900  prognosis  biomarker  
Live cell single molecule-guided Bayesian localization super resolution microscopy 期刊论文
CELL RESEARCH, 2017, 卷号: 27, 期号: 5, 页码: 713-716
作者:  Xu, Fan;  Zhang, Mingshu;  He, Wenting;  Han, Renmin;  Xue, Fudong;  Liu, Zhiyong;  Zhang, Fa;  Lippincott-Schwartz, Jennifer;  Xu, Pingyong
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 198, 期号: 2, 页码: 103-115
作者:  Wan, Xiaohua;  Katchalski, Tsvi;  Churas, Christopher;  Ghosh, Sreya;  Phan, Sebastien;  Lawrence, Albert;  Hao, Yu;  Zhou, Ziying;  Chen, Ruijuan;  Chen, Yu;  Zhang, Fa;  Ellisman, Mark H.
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12
Electron  Microscope  Tomography  Simulator  Tilt  Series  Reconstruction  Tracking  Alignment  Block face  Inversion  Curvilinear  Warping