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The interplay between tissue-resident microbiome and host proteins by integrated multi-omics during progression of colorectal adenoma to carcinoma 期刊论文
IMETA, 2025, 页码: 37
作者:  Wu, Di;  Wang, An-Jun;  Bu, De-Chao;  Sun, Yan-Yan;  Li, Chen-Hao;  Hong, Yue-Mei;  Zhang, Shan;  Chen, Shi-Yang;  Zhou, Jin-An;  Zhang, Tian-Yi;  Yu, Min-Hao;  Ma, Yong-Jing;  Wang, Xiu-Li;  Xu, Jia;  He, Wei;  Heeschen, Christopher;  Chen, Jian-Feng;  Mao, Wen-Jun;  Ding, Hui;  Wu, Wen-Juan;  Zhao, Yi;  Wang, Hui;  Liu, Ning-Ning
收藏  |  浏览/下载：4/0  |  提交时间：2025/12/03
colorectal cancer  metagenomics  microbiota-host interaction  proteomics  tissue-resident microbiome  
Validation Methods of Peptide Identification Results in Proteomics* 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min
收藏  |  浏览/下载：54/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：78/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
蛋白质组学肽段鉴定可信度评价方法 期刊论文
生物化学与生物物理进展, 2023, 卷号: 50, 期号: 1, 页码: 109
作者:  周文婧;  曾文锋;  迟浩;  贺思敏
收藏  |  浏览/下载：42/0  |  提交时间：2024/05/20
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  蛋白质组学  质谱分析  目标-诱饵库方法  假发现率  可信度评价方法  
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：81/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731
作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min
收藏  |  浏览/下载：124/0  |  提交时间：2019/12/10
NF-kappa B-driven miR-34a impairs Treg/Th17 balance via targeting Foxp3 期刊论文
JOURNAL OF AUTOIMMUNITY, 2019, 卷号: 102, 页码: 96-113
作者:  Xie, Mengxiao;  Wang, Jingzhe;  Gong, Wen;  Xu, Huiling;  Pan, Xiaoyuan;  Chen, Yunpeng;  Ru, Songwei;  Wang, Hui;  Chen, Xiaodan;  Zhao, Yi;  Li, Jing;  Yin, Qing;  Xia, Sheng;  Zhou, Xiaoming;  Liu, Xia;  Shao, Qixiang
收藏  |  浏览/下载：116/0  |  提交时间：2019/12/10
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：140/0  |  提交时间：2019/12/10
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载：112/0  |  提交时间：2019/12/10
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：287/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate