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TiltRec: an ultra-fast and open-source toolkit for cryo-electron tomographic reconstruction 期刊论文
BIOINFORMATICS, 2025, 卷号: 41, 期号: 3, 页码: 5
作者:  Jiao, Yanxin;  Li, Hongjia;  Xue, Yang;  Yang, Guoliang;  Qi, Lei;  Zhang, Fa;  Zang, Dawei;  Han, Renmin
收藏  |  浏览/下载：1/0  |  提交时间：2025/06/25
Enhancing Recommendation with Denoising Auxiliary Task 期刊论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2024, 卷号: 39, 期号: 5, 页码: 1123-1137
作者:  Liu, Peng-Sheng;  Zheng, Li-Nan;  Chen, Jia-Le;  Zhang, Guang-Fa;  Xu, Yang;  Fang, Jin-Yun
收藏  |  浏览/下载：5/0  |  提交时间：2025/06/25
auxiliary task learning  recommender system  sequence denoising  
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 页码: 12
作者:  Yang, Zhidong;  Li, Hongjia;  Zang, Dawei;  Han, Renmin;  Zhang, Fa
收藏  |  浏览/下载：17/0  |  提交时间：2024/12/06
cryo-EM  image denoising  noise simulation and deep learning  
MarkerDetector: A method for robust fiducial marker detection in electron micrographs using wavelet-based template 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2024, 卷号: 216, 期号: 1, 页码: 13
作者:  Hou, Gaoxin;  Yang, Zhidong;  Zang, Dawei;  Fernandez, Jose-Jesus;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载：33/0  |  提交时间：2024/05/20
Electron microscopy  Wavelet transform  Template matching  Fiducial marker detection  
Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 卷号: 28, 期号: 1, 页码: 7-18
作者:  Yan, Rui;  Lv, Zhilong;  Yang, Zhidong;  Lin, Senlin;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：23/0  |  提交时间：2024/05/20
Hierarchical representation  pathological image analysis  sparse transformer  survival analysis  
Self-supervised noise modeling and sparsity guided electron tomography volumetric image denoising 期刊论文
ULTRAMICROSCOPY, 2024, 卷号: 255, 页码: 11
作者:  Yang, Zhidong;  Zang, Dawei;  Li, Hongjia;  Zhang, Zhao;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载：29/0  |  提交时间：2024/05/20
Electron tomography  Image denoising  Self-supervised learning  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：60/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing 期刊论文
GENOME BIOLOGY, 2023, 卷号: 24, 期号: 1, 页码: 29
作者:  Han, Renmin;  Qi, Junhai;  Xue, Yang;  Sun, Xiujuan;  Zhang, Fa;  Gao, Xin;  Li, Guojun
收藏  |  浏览/下载：39/0  |  提交时间：2023/12/04
Nanopore sequencing  Demultiplexing  Clustering  
Development of a multiple convolutional neural network-facilitated diagnostic screening program for immunofluorescence images of IgA nephropathy and idiopathic membranous nephropathy 期刊论文
CLINICAL KIDNEY JOURNAL, 2023, 页码: 11
作者:  Xia, Peng;  Lv, Zhilong;  Wen, Yubing;  Zhang, Baichuan;  Zhao, Xuesong;  Zhang, Boyao;  Wang, Ying;  Cui, Haoyuan;  Wang, Chuanpeng;  Zheng, Hua;  Qin, Yan;  Sun, Lijun;  Ye, Nan;  Cheng, Hong;  Yao, Li;  Zhou, Hua;  Zhen, Junhui;  Hu, Zhao;  Zhu, Weiguo;  Zhang, Fa;  Li, Xuemei;  Ren, Fei;  Chen, Limeng
收藏  |  浏览/下载：40/0  |  提交时间：2023/12/04
convolutional neural network  idiopathic membranous nephropathy  IgA nephropathy  immunofluorescence  
Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA 期刊论文
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 9
作者:  Cheng, Jing;  Liu, Tong;  You, Xin;  Zhang, Fa;  Sui, Sen-Fang;  Wan, Xiaohua;  Zhang, Xinzheng
收藏  |  浏览/下载：39/0  |  提交时间：2023/12/04