中国科学院计算技术研究所机构知识库

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	Validation Methods of Peptide Identification Results in Proteomics* 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min 收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	蛋白质组学肽段鉴定可信度评价方法 期刊论文 生物化学与生物物理进展, 2023, 卷号: 50, 期号: 1, 页码: 109 作者:  周文婧;  曾文锋;  迟浩;  贺思敏 收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  蛋白质组学  质谱分析  目标-诱饵库方法  假发现率  可信度评价方法
	Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758 作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry
	pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文 JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9 作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao 收藏  |  浏览/下载：31/0  |  提交时间：2022/06/21 Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning
	Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3 期刊论文 NATURE METHODS, 2021, 页码: 15 作者:  Zeng, Wen-Feng;  Cao, Wei-Qian;  Liu, Ming-Qi;  He, Si-Min;  Yang, Peng-Yuan 收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Characterization of collision-induced dissociation of deprotonated peptides of 4-16 amino acids using high-resolution mass spectrometry 期刊论文 INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2019, 卷号: 445, 页码: 8 作者:  Zuo, Mei-Qing;  Sun, Rui-Xiang;  Fang, Run-Qian;  He, Si-Min;  Dong, Meng-Qiu 收藏  |  浏览/下载：258/0  |  提交时间：2019/12/10 Negative-ion mass spectrometry  Peptide fragmentation  Collision-induced dissociation (CID)  Higher-energy collisional dissociation (HCD)  Fragmentation efficiency
	Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11 作者:  Jones, Alexander X.;  Cao, Yong;  Tangi, Yu-Liang;  Wang, Jian-Hua;  Ding, Yue-He;  Tan, Hui;  Chen, Zhen-Lin;  Fang, Run-Qian;  Yin, Jili;  Chen, Rong-Chang;  Zhu, Xing;  She, Yang;  Huang, Niu;  Shao, Feng;  Ye, Keqiong;  Sun, Rui-Xiang;  He, Si-Min;  Lei, Xiaoguang;  Dong, Meng-Qiu 收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
	MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文 ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731 作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min 收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10