中国科学院计算技术研究所机构知识库

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	Global Analysis of Protein and Small-Molecule Substrates of Ubiquitin-Like Proteins 期刊论文 MOLECULAR & CELLULAR PROTEOMICS, 2025, 卷号: 24, 期号: 7, 页码: 20 作者:  Shao, Guang-Can;  Chen, Zhen-Lin;  Lu, Shan;  Wu, Qing-Cui;  Sheng, Yao;  Wang, Jing;  Ma, Yan;  Sui, Jian-Hua;  Chi, Hao;  Qi, Xiang-Bing;  He, Si-Min;  Du, Li-Lin;  Dong, Meng-Qiu 收藏  |  浏览/下载：4/0  |  提交时间：2025/12/03
	Validation Methods of Peptide Identification Results in Proteomics* 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min 收藏  |  浏览/下载：54/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：78/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	A universal database reduction method based on the sequence tag strategy to facilitate large-scale database search in proteomics 期刊论文 INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2023, 卷号: 483, 页码: 11 作者:  Wang, Kai-Fei;  Wu, Yu-Zhuo;  Chi, Hao 收藏  |  浏览/下载：51/0  |  提交时间：2023/07/12
	蛋白质组学肽段鉴定可信度评价方法 期刊论文 生物化学与生物物理进展, 2023, 卷号: 50, 期号: 1, 页码: 109 作者:  周文婧;  曾文锋;  迟浩;  贺思敏 收藏  |  浏览/下载：42/0  |  提交时间：2024/05/20 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  蛋白质组学  质谱分析  目标-诱饵库方法  假发现率  可信度评价方法
	pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文 JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9 作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao 收藏  |  浏览/下载：81/0  |  提交时间：2022/06/21 Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：87/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota 期刊论文 ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 17, 页码: 6594-6598 作者:  Zhang, Xu;  Cheng, Kai;  Ning, Zhibin;  Mayne, Janice;  Walker, Krystal;  Chi, Hao;  Farnsworth, Charles L.;  Lee, Kimberly;  Figeys, Daniel 收藏  |  浏览/下载：74/0  |  提交时间：2021/12/01
	Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814 作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping 收藏  |  浏览/下载：84/0  |  提交时间：2021/12/01 Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues
	GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文 PROTEOMICS, 2020, 页码: 9 作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao 收藏  |  浏览/下载：86/0  |  提交时间：2020/12/10 cooperative game  deep learning  proteomics  sequence tag generation