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DHSA: efficient doubly homomorphic secure aggregation for cross-silo federated learning 期刊论文
JOURNAL OF SUPERCOMPUTING, 2022, 页码: 31
作者:  Liu, Zizhen;  Chen, Si;  Ye, Jing;  Fan, Junfeng;  Li, Huawei;  Li, Xiaowei
收藏  |  浏览/下载:26/0  |  提交时间:2022/12/07
Federated learning  Security  Efficient  Homomorphic  
Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758
作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min
收藏  |  浏览/下载:29/0  |  提交时间:2022/12/07
cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry  
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载:48/0  |  提交时间:2021/12/01
cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning  
Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Jones, Alexander X.;  Cao, Yong;  Tangi, Yu-Liang;  Wang, Jian-Hua;  Ding, Yue-He;  Tan, Hui;  Chen, Zhen-Lin;  Fang, Run-Qian;  Yin, Jili;  Chen, Rong-Chang;  Zhu, Xing;  She, Yang;  Huang, Niu;  Shao, Feng;  Ye, Keqiong;  Sun, Rui-Xiang;  He, Si-Min;  Lei, Xiaoguang;  Dong, Meng-Qiu
收藏  |  浏览/下载:102/0  |  提交时间:2019/12/10
An extravascular fluid transport system based on structural framework of fibrous connective tissues in human body 期刊论文
CELL PROLIFERATION, 2019, 页码: 14
作者:  Li, Hongyi;  Yang, Chongqing;  Yin, Yajun;  Wang, Fang;  Chen, Min;  Xu, Liang;  Wang, Naili;  Zhang, Di;  Wang, Xiaoxia;  Kong, Yiya;  Li, Qing;  Su, Si;  Cao, Yupeng;  Liu, Wentao;  Ao, Zhuo;  Dai, Luru;  Ma, Chao;  Shang, Lijun;  Han, Dong;  Ji, Fusui;  Li, Hua
收藏  |  浏览/下载:85/0  |  提交时间:2019/12/10
extracellular matrix  fibrous connective tissues  gross anatomy  interfacial transport  interstitial fluid  
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:102/0  |  提交时间:2019/12/10
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文
NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+
作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min
收藏  |  浏览/下载:95/0  |  提交时间:2019/08/16
SMG-1 inhibition by miR-192/-215 causes epithelial-mesenchymal transition in gastric carcinogenesis via activation of Wnt signaling 期刊论文
CANCER MEDICINE, 2018, 卷号: 7, 期号: 1, 页码: 146-156
作者:  Zhang, Xiaojing;  Peng, Yin;  Huang, Yong;  Yang, Mengting;  Yan, Ruibin;  Zhao, Yanqiu;  Cheng, Yulan;  Liu, Xi;  Deng, Shiqi;  Feng, Xianling;  Lin, Huijuan;  Yu, Huimin;  Chen, Si;  Zhao, Zhenfu;  Li, Shanni;  Li, Kuan;  Wang, Liang;  Wei, Yanjie;  He, Zhendan;  Fan, Xinmin;  Meltzer, Stephen J.;  Li, Song;  Jin, Zhe
收藏  |  浏览/下载:74/0  |  提交时间:2019/12/10
EMT  gastric cancer  miR-192/-215  SMG-1  Wnt signaling pathway  
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min
收藏  |  浏览/下载:82/0  |  提交时间:2019/12/10
tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation  
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data (Reprinted from vol 125, pg 89-97, 2015) 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 129, 页码: 33-41
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:60/0  |  提交时间:2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS