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PIXER: an automated particle-selection method based on segmentation using a deep neural network 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 14
作者:  Zhang, Jingrong;  Wang, Zihao;  Chen, Yu;  Han, Renmin;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：83/0  |  提交时间：2019/04/03
Cryo-electron microscope  Single-particle analysis  Deep learning  Particle selection  Segmentation  
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：78/0  |  提交时间：2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
无权访问的条目 学位论文
作者:  陈庾
Adobe PDF(13078Kb)  |  收藏  |  浏览/下载：0/0  |  提交时间：2018/06/22
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2017, 页码: 12
作者:  Wang, Zihao;  Chen, Yu;  Zhang, Jingrong;  Li, Lun;  Wan, Xiaohua;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：67/0  |  提交时间：2019/12/10
electron tomography  hybrid task allocation strategy  ICON  MIC acceleration  parallel NUFFT  Tianhe-2 supercomputer  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：59/0  |  提交时间：2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 198, 期号: 2, 页码: 103-115
作者:  Wan, Xiaohua;  Katchalski, Tsvi;  Churas, Christopher;  Ghosh, Sreya;  Phan, Sebastien;  Lawrence, Albert;  Hao, Yu;  Zhou, Ziying;  Chen, Ruijuan;  Chen, Yu;  Zhang, Fa;  Ellisman, Mark H.
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12
Electron  Microscope  Tomography  Simulator  Tilt  Series  Reconstruction  Tracking  Alignment  Block face  Inversion  Curvilinear  Warping  
A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 2, 页码: 316-325
作者:  Zhang, Fa;  Chen, Yu;  Ren, Fei;  Wang, Xuan;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载：63/0  |  提交时间：2019/12/12
Particle selection  feature-based  template-matching  rotation-invariant feature  correlation score functions  
ICON: 3D reconstruction with 'missing-information' restoration in biological electron tomography 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 100-112
作者:  Deng, Yuchen;  Chen, Yu;  Zhang, Yan;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载：57/0  |  提交时间：2019/12/13
Compressed sensing  Electron tomography  Missing wedge  NUFFT  Sub-tomogram averaging  
FIRT: Filtered iterative reconstruction technique with information restoration 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 49-61
作者:  Chen, Yu;  Zhang, Yan;  Zhang, Kai;  Deng, Yuchen;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载：60/0  |  提交时间：2019/12/13
Algebra reconstruction technique  Electron tomography  Filtered iterative reconstruction technique  Information restoration  Nonlinear diffusion filter  
Code reordering on limited branch offset 期刊论文
ACM TRANSACTIONS ON ARCHITECTURE AND CODE OPTIMIZATION, 2007, 卷号: 4, 期号: 2, 页码: 23
作者:  Chen, Yu;  Zhang, Fuxin
收藏  |  浏览/下载：45/0  |  提交时间：2019/12/16
algorithms  code reordering  godson processor  link-time optimization