FIRT: Filtered iterative reconstruction technique with information restoration

doi:10.1016/j.jsb.2016.04.015

	FIRT: Filtered iterative reconstruction technique with information restoration
	Chen, Yu 1,3; Zhang, Yan 2; Zhang, Kai 2,3; Deng, Yuchen 2,3; Wang, Shengliu 2,3; Zhang, Fa 1; Sun, Fei 2,3,4
	2016-07-01
发表期刊	JOURNAL OF STRUCTURAL BIOLOGY
ISSN	1047-8477
卷号	195 期号:1 页码:49-61
摘要	Electron tomography (ET) combining subsequent sub-volume averaging has been becoming a unique way to study the in situ 3D structures of macromolecular complexes. However, information missing in electron tomography due to limited angular sampling is still the bottleneck in high-resolution electron tomography application. Here, based on the understanding of smooth nature of biological specimen, we present a new iterative image reconstruction algorithm, FIRT (filtered iterative reconstruction technique) for electron tomography by combining the algebra reconstruction technique (ART) and the nonlinear diffusion (ND) filter technique. Using both simulated and experimental data, in comparison to ART and weight back projection method, we proved that FIRT could generate a better reconstruction with reduced ray artifacts and significant improved correlation with the ground truth and partially restore the information at the non-sampled angular region, which was proved by investigating the 900 re-projection and by the cross-validation method. This new algorithm will be subsequently useful in the future for both cellular and molecular ET with better quality and improved structural details. (C) 2016 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license.
关键词	Algebra reconstruction technique Electron tomography Filtered iterative reconstruction technique Information restoration Nonlinear diffusion filter
DOI	10.1016/j.jsb.2016.04.015
收录类别	SCI
语种	英语
资助项目	Strategic Priority Research Program of Chinese Academy of Sciences[XDB08030202] ; National Basic Research Program (973 Program) of Ministry of Science and Technology of China[2014CB910700] ; National Natural Science Foundation of China[61232001] ; National Natural Science Foundation of China[61472397] ; National Natural Science Foundation of China[61502455] ; National Natural Science Foundation of China[31470037] ; National Natural Science Foundation of China[31100617]
WOS研究方向	Biochemistry & Molecular Biology ; Biophysics ; Cell Biology
WOS类目	Biochemistry & Molecular Biology ; Biophysics ; Cell Biology
WOS记录号	WOS:000377735300006
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
引用统计	被引频次：17[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/8367
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Zhang, Kai; Zhang, Fa; Sun, Fei
作者单位	1.Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China 2.Chinese Acad Sci, Inst Biophys, Natl Lab Biomacromol, 15 Datun Rd, Beijing 100101, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China 4.Chinese Acad Sci, Inst Biophys, Ctr Biol Imaging, 15 Datun Rd, Beijing 100101, Peoples R China
推荐引用方式 GB/T 7714	Chen, Yu,Zhang, Yan,Zhang, Kai,et al. FIRT: Filtered iterative reconstruction technique with information restoration[J]. JOURNAL OF STRUCTURAL BIOLOGY,2016,195(1):49-61.
APA	Chen, Yu.,Zhang, Yan.,Zhang, Kai.,Deng, Yuchen.,Wang, Shengliu.,...&Sun, Fei.(2016).FIRT: Filtered iterative reconstruction technique with information restoration.JOURNAL OF STRUCTURAL BIOLOGY,195(1),49-61.
MLA	Chen, Yu,et al."FIRT: Filtered iterative reconstruction technique with information restoration".JOURNAL OF STRUCTURAL BIOLOGY 195.1(2016):49-61.