中国科学院计算技术研究所机构知识库

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	Multiomics Reveals the Mechanism of Natranaerobius thermophilus Adaptation to Combined Hypersaline, Alkaline, and Elevated Temperature Environments 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2025, 卷号: 24, 期号: 8, 页码: 4243-4258 作者:  Xing, Qinghua;  Tao, Xinyi;  Zhang, Shanshan;  Mesbah, Noha M.;  Mao, Xinwei;  Guo, Xiaomeng;  Hu, Qingping;  Wang, Haisheng;  Zhao, Baisuo 收藏  |  浏览/下载：4/0  |  提交时间：2025/12/03 polyextremophile  three-extremes  multiomics  hypersaline  alkaline  elevatedtemperature  Natranaerobius thermophilus
	PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 23, 期号: 2, 页码: 574-584 作者:  Tarn, Ching;  Wu, Yu-Zhuo;  Wang, Kai-Fei 收藏  |  浏览/下载：48/0  |  提交时间：2024/05/20 mass spectrometry  peptide identification  precursor ion detection  deisotope  linear programming
	Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 22, 期号: 8, 页码: 2593-2607 作者:  Cao, Yong;  Liu, Xin-Tong;  Mao, Peng-Zhi;  Chen, Zhen-Lin;  Tarn, Ching;  Dong, Meng-Qiu 收藏  |  浏览/下载：53/0  |  提交时间：2023/12/04 CXMS  XL-MS  NHS ester cross-linker  pLink  xiSearch  MeroX
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：87/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814 作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping 收藏  |  浏览/下载：84/0  |  提交时间：2021/12/01 Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues
	pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758 作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：287/0  |  提交时间：2019/08/16 tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate
	Global Quantification of Intact Proteins via Chemical Isotope Labeling and Mass Spectrometry 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 5, 页码: 2185-2194 作者:  Liu, Zheyi;  Wang, Ruimin;  Liu, Jing;  Sun, Ruixiang;  Wang, Fangjun 收藏  |  浏览/下载：117/0  |  提交时间：2019/08/16 mass spectrometry  chemical isotope labeling  intact protein quantification  pTOP  highest isotopic peak
	pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min 收藏  |  浏览/下载：118/0  |  提交时间：2019/12/10 tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation
	Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min 收藏  |  浏览/下载：87/0  |  提交时间：2019/12/12 tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications
	Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2015, 卷号: 14, 期号: 11, 页码: 4815-4822 作者:  McClatchy, Daniel B.;  Ma, Yuanhui;  Liu, Chao;  Stein, Benjamin D.;  Martinez-Bartolome, Salvador;  Vasquez, Debbie;  Hellberg, Kristina;  Shaw, Reuben J.;  Yates, John R., III 收藏  |  浏览/下载：85/0  |  提交时间：2019/12/13 azidohomoalanine  newly synthesized proteins  proteomics  mass spectrometry  BONCAT  LKB1  quantitation