中国科学院计算技术研究所机构知识库

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	PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 23, 期号: 2, 页码: 574-584 作者:  Tarn, Ching;  Wu, Yu-Zhuo;  Wang, Kai-Fei 收藏  |  浏览/下载：12/0  |  提交时间：2024/05/20 mass spectrometry  peptide identification  precursor ion detection  deisotope  linear programming
	Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 22, 期号: 8, 页码: 2593-2607 作者:  Cao, Yong;  Liu, Xin-Tong;  Mao, Peng-Zhi;  Chen, Zhen-Lin;  Tarn, Ching;  Dong, Meng-Qiu 收藏  |  浏览/下载：15/0  |  提交时间：2023/12/04 CXMS  XL-MS  NHS ester cross-linker  pLink  xiSearch  MeroX
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：48/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814 作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping 收藏  |  浏览/下载：49/0  |  提交时间：2021/12/01 Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues
	pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758 作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：256/0  |  提交时间：2019/08/16 tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate
	Global Quantification of Intact Proteins via Chemical Isotope Labeling and Mass Spectrometry 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 5, 页码: 2185-2194 作者:  Liu, Zheyi;  Wang, Ruimin;  Liu, Jing;  Sun, Ruixiang;  Wang, Fangjun 收藏  |  浏览/下载：82/0  |  提交时间：2019/08/16 mass spectrometry  chemical isotope labeling  intact protein quantification  pTOP  highest isotopic peak
	pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min 收藏  |  浏览/下载：82/0  |  提交时间：2019/12/10 tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation
	Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min 收藏  |  浏览/下载：58/0  |  提交时间：2019/12/12 tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications
	Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2015, 卷号: 14, 期号: 11, 页码: 4815-4822 作者:  McClatchy, Daniel B.;  Ma, Yuanhui;  Liu, Chao;  Stein, Benjamin D.;  Martinez-Bartolome, Salvador;  Vasquez, Debbie;  Hellberg, Kristina;  Shaw, Reuben J.;  Yates, John R., III 收藏  |  浏览/下载：49/0  |  提交时间：2019/12/13 azidohomoalanine  newly synthesized proteins  proteomics  mass spectrometry  BONCAT  LKB1  quantitation
	Improved Peptide Identification for Proteomic Analysis Based on Comprehensive Characterization of Electron Transfer Dissociation Spectra 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2010, 卷号: 9, 期号: 12, 页码: 6354-6367 作者:  Sun, Rui-Xiang;  Dong, Meng-Qiu;  Song, Chun-Qing;  Chi, Hao;  Yang, Bing;  Xiu, Li-Yun;  Tao, Li;  Jing, Ziu-Yi;  Liu, Chao;  Wang, Le-Heng;  Fu, Yan;  He, Si-Min 收藏  |  浏览/下载：68/0  |  提交时间：2019/12/16 ETD  hydrogen rearrangement  peptide sequencing  search engine