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Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA 期刊论文
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 9
作者:  Cheng, Jing;  Liu, Tong;  You, Xin;  Zhang, Fa;  Sui, Sen-Fang;  Wan, Xiaohua;  Zhang, Xinzheng
收藏  |  浏览/下载：6/0  |  提交时间：2023/12/04
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载：11/0  |  提交时间：2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
Vimentin binds to a novel tumor suppressor protein, GSPT1-238aa, encoded by circGSPT1 with a selective encoding priority to halt autophagy in gastric carcinoma 期刊论文
CANCER LETTERS, 2022, 卷号: 545, 页码: 14
作者:  Hu, Fan;  Peng, Yin;  Chang, Shanshan;  Luo, Xiaonuan;  Yuan, Yuan;  Zhu, Xiaohui;  Xu, Yidan;  Du, Kaining;  Chen, Yang;  Deng, Shiqi;  Yu, Fan;  Feng, Xianling;  Fan, Xinmin;  Ashktorab, Hassan;  Smoot, Duane;  Meltzer, Stephen J.;  Li, Song;  Wei, Yanjie;  Zhang, Xiaojing;  Jin, Zhe
收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
Circular RNAs  circGSPT1  Autophagy  Translation  Gastric cancer  
Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer 期刊论文
BIOINFORMATICS, 2022, 页码: 8
作者:  Li, Hongjia;  Zhang, Hui;  Wan, Xiaohua;  Yang, Zhidong;  Li, Chengmin;  Li, Jintao;  Han, Renmin;  Zhu, Ping;  Zhang, Fa
收藏  |  浏览/下载：17/0  |  提交时间：2022/12/07
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：28/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
A novel protein AXIN1-295aa encoded by circAXIN1 activates the Wnt/beta-catenin signaling pathway to promote gastric cancer progression 期刊论文
MOLECULAR CANCER, 2021, 卷号: 20, 期号: 1, 页码: 19
作者:  Peng, Yin;  Xu, Yidan;  Zhang, Xiaojing;  Deng, Shiqi;  Yuan, Yuan;  Luo, Xiaonuan;  Hossain, Md Tofazzal;  Zhu, Xiaohui;  Du, Kaining;  Hu, Fan;  Chen, Yang;  Chang, Shanshan;  Feng, Xianling;  Fan, Xinmin;  Ashktorab, Hassan;  Smoot, Duane;  Meltzer, Stephen J.;  Hou, Gangqiang;  Wei, Yanjie;  Li, Song;  Qin, Ying;  Jin, Zhe
收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
AXIN1  Wnt  Translation  circRNA  
The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor 期刊论文
ISCIENCE, 2021, 卷号: 24, 期号: 11, 页码: 15
作者:  Huang, Chuncui;  Tan, Zeshun;  Zhao, Keli;  Zou, Wenjun;  Wang, Hui;  Gao, Huanyu;  Sun, Shiwei;  Bu, Dongbo;  Chai, Wengang;  Li, Yan
收藏  |  浏览/下载：19/0  |  提交时间：2022/12/07
Multi-labelled proteins recognition for high-throughput microscopy images using deep convolutional neural networks 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: SUPPL 3, 页码: 14
作者:  Zhang, Enze;  Zhang, Boheng;  Hu, Shaohan;  Zhang, Fa;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载：34/0  |  提交时间：2021/12/01
Protein pattern recognition  DNNs  Multi-class and multi-label  Label imbalance  High-throughput microscopy images  
Imbalance of TGF-beta 1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness 期刊论文
MOLECULAR THERAPY, 2021, 卷号: 29, 期号: 6, 页码: 2067-2087
作者:  Ning, Junya;  Ye, Yingnan;  Bu, Dechao;  Zhao, Gang;  Song, Tianqiang;  Liu, Pengpeng;  Yu, Wenwen;  Wang, Hailong;  Li, Hui;  Ren, Xiubao;  Ying, Guoguang;  Zhao, Yi;  Yu, Jinpu
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Predicting the aptamer SYL3C-EpCAM complex's structure with the Martini-based simulation protocol 期刊论文
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2021, 卷号: 23, 期号: 12, 页码: 7066-7079
作者:  Shang, Xu;  Guan, Zhen;  Zhang, Shuai;  Shi, Lulin;  You, Haihang
收藏  |  浏览/下载：25/0  |  提交时间：2021/12/01