中国科学院计算技术研究所机构知识库

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	Single-sequence protein structure prediction by integrating protein language models 期刊论文 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7 作者:  Jing, Xiaoyang;  Wu, Fandi;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20 protein structure prediction  protein language model  single-sequence protein structure rediction  antibody structure prediction  single mutation effect
	SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488 作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20 Deep learning  protein structure prediction
	Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文 GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925 作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20 Protein folding  Protein structure prediction  Deep learning  Transformer  Language model
	Determining protein structures in cellular lamella at pseudo-atomic resolution by GisSPA 期刊论文 NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 9 作者:  Cheng, Jing;  Liu, Tong;  You, Xin;  Zhang, Fa;  Sui, Sen-Fang;  Wan, Xiaohua;  Zhang, Xinzheng 收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04
	Improving protein structure prediction using templates and sequence embedding 期刊论文 BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8 作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04
	Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758 作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry
	Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文 FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13 作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin 收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07 gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction
	Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996 作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	An Integrated Deep Learning and Molecular Dynamics Simulation-Based Screening Pipeline Identifies Inhibitors of a New Cancer Drug Target TIPE2 期刊论文 FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13 作者:  Zhang, Haiping;  Li, Junxin;  Saravanan, Konda Mani;  Wu, Hao;  Wang, Zhichao;  Wu, Du;  Wei, Yanjie;  Lu, Zhen;  Chen, Youhai H.;  Wan, Xiaochun;  Pan, Yi 收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21 TIPE2  UM-164  virtual screening  deep learning  molecular dynamics simulation