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DockingGA: enhancing targeted molecule generation using transformer neural network and genetic algorithm with docking simulation 期刊论文
BRIEFINGS IN FUNCTIONAL GENOMICS, 2024, 页码: 12
作者:  Gao, Changnan;  Bao, Wenjie;  Wang, Shuang;  Zheng, Jianyang;  Wang, Lulu;  Ren, Yongqi;  Jiao, Linfang;  Wang, Jianmin;  Wang, Xun
收藏  |  浏览/下载:1/0  |  提交时间:2024/05/20
molecule generation  molecule optimization  drug discovery  deep learning  drug design  genetic algorithm  
Towards interpretable imaging genomics analysis: Methodological developments and applications 期刊论文
INFORMATION FUSION, 2024, 卷号: 102, 页码: 18
作者:  Cen, Xiaoping;  Dong, Wei;  Lv, Wei;  Zhao, Yi;  Dubee, Fred;  Mentis, Alexios-Fotios A.;  Jovic, Dragomirka;  Yang, Huanming;  Li, Yixue
收藏  |  浏览/下载:7/0  |  提交时间:2023/12/04
Interpretability  Imaging genomics  Genotype -phenotype association  Precision medicine  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
Accelerating k-Shape Time Series Clustering Algorithm Using GPU 期刊论文
IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 2023, 卷号: 34, 期号: 10, 页码: 2718-2734
作者:  Wang, Xun;  Song, Ruibao;  Xiao, Junmin;  Li, Tong;  Li, Xueqi
收藏  |  浏览/下载:6/0  |  提交时间:2023/12/04
Data space  time series analysis  time series clustering  GPU architecture  k-shape algorithm  
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:1/0  |  提交时间:2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Revolutionizing Antibody Discovery: An Innovative AI Model for Generating Robust Libraries 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 910-912
作者:  Wang, Yaojun;  Sun, Shiwei
收藏  |  浏览/下载:0/0  |  提交时间:2024/05/20
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载:11/0  |  提交时间:2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
Null-free False Discovery Rate Control Using Decoy Permutations 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2022, 卷号: 38, 期号: 2, 页码: 235-253
作者:  He, Kun;  Li, Meng-jie;  Fu, Yan;  Gong, Fu-zhou;  Sun, Xiao-ming
收藏  |  浏览/下载:20/0  |  提交时间:2022/12/07
multiple testing  false discovery rate  null distribution-free  p-value-free  decoy permutations  knockoff filter  
National Genomics Data Center, China 项目
资助机构: National Genomics Data Center, China, 2022-
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收藏  |  浏览/下载:12/0  |  提交时间:2022/12/07
piRBase: integrating piRNA annotation in all aspects 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D265-D272
作者:  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Ying, Zhiye;  Yu, Haopeng;  Li, Yanyan;  Zhao, Yi;  Zeng, Xiaoxi;  He, Shunmin;  Chen, Runsheng
收藏  |  浏览/下载:20/0  |  提交时间:2022/12/07