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MarkerDetector: A method for robust fiducial marker detection in electron micrographs using wavelet-based template 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2024, 卷号: 216, 期号: 1, 页码: 13
作者:  Hou, Gaoxin;  Yang, Zhidong;  Zang, Dawei;  Fernandez, Jose-Jesus;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载：7/0  |  提交时间：2024/05/20
Electron microscopy  Wavelet transform  Template matching  Fiducial marker detection  
Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 卷号: 28, 期号: 1, 页码: 7-18
作者:  Yan, Rui;  Lv, Zhilong;  Yang, Zhidong;  Lin, Senlin;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：7/0  |  提交时间：2024/05/20
Hierarchical representation  pathological image analysis  sparse transformer  survival analysis  
Streamlining spatial omics data analysis with Pysodb 期刊论文
NATURE PROTOCOLS, 2023, 页码: 72
作者:  Lin, Senlin;  Zhao, Fangyuan;  Wu, Zihan;  Yao, Jianhua;  Zhao, Yi;  Yuan, Zhiyuan
收藏  |  浏览/下载：7/0  |  提交时间：2024/05/20
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：18/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：24/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
Improving protein structure prediction using templates and sequence embedding 期刊论文
BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8
作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo
收藏  |  浏览/下载：11/0  |  提交时间：2023/12/04
EEGDnet: Fusing non-local and local self-similarity for EEG signal denoising with transformer 期刊论文
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 卷号: 151, 页码: 8
作者:  Pu, Xiaorong;  Yi, Peng;  Chen, Kecheng;  Ma, Zhaoqi;  Zhao, Di;  Ren, Yazhou
收藏  |  浏览/下载：16/0  |  提交时间：2023/07/12
Electroencephalography  Artifact removal  Transformer  
Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 20, 页码: 4797-4805
作者:  He, Bintao;  Zhang, Yan;  Zhang, Fa;  Han, Renmin
收藏  |  浏览/下载：16/0  |  提交时间：2023/07/12
Identification of Autism spectrum disorder based on a novel feature selection method and Variational Autoencoder 期刊论文
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 卷号: 148, 页码: 11
作者:  Zhang, Fangyu;  Wei, Yanjie;  Liu, Jin;  Wang, Yanlin;  Xi, Wenhui;  Pan, Yi
收藏  |  浏览/下载：19/0  |  提交时间：2023/07/12
ASD  fMRI  Filter feature selection  VAE  ABIDE  Classification  
All-Around Real Label Supervision: Cyclic Prototype Consistency Learning for Semi-Supervised Medical Image Segmentation 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2022, 卷号: 26, 期号: 7, 页码: 3174-3184
作者:  Xu, Zhe;  Wang, Yixin;  Lu, Donghuan;  Yu, Lequan;  Yan, Jiangpeng;  Luo, Jie;  Ma, Kai;  Zheng, Yefeng;  Tong, Raymond Kai-yu
收藏  |  浏览/下载：22/0  |  提交时间：2022/12/07
Image segmentation  Prototypes  Biomedical imaging  Perturbation methods  Reliability  Feature extraction  Training  Medical image segmentation  prototype learning  semi-supervised learning