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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Microbiome Resilience and Health Implications for People in Half-Year Travel 期刊论文
FRONTIERS IN IMMUNOLOGY, 2022, 卷号: 13, 页码: 15
作者:  Cheng, Mingyue;  Liu, Hong;  Han, Maozhen;  Li, Shuai Cheng;  Bu, Dongbo;  Sun, Shiwei;  Hu, Zhiqiang;  Yang, Pengshuo;  Wang, Rui;  Liu, Yawen;  Chen, Feng;  Peng, Jianjun;  Peng, Hong;  Song, Hongxing;  Xia, Yang;  Chu, Liqun;  Zhou, Quan;  Guan, Feng;  Wu, Jing;  Tan, Guangming;  Ning, Kang
收藏  |  浏览/下载：22/0  |  提交时间：2022/12/07
travel  enterotype  microbiome  bi-directional plasticity  resilience  dietary shift  immunity  health  
The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor 期刊论文
ISCIENCE, 2021, 卷号: 24, 期号: 11, 页码: 15
作者:  Huang, Chuncui;  Tan, Zeshun;  Zhao, Keli;  Zou, Wenjun;  Wang, Hui;  Gao, Huanyu;  Sun, Shiwei;  Bu, Dongbo;  Chai, Wengang;  Li, Yan
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service  
HepParser: An Intelligent Software Program for Deciphering Low-Molecular-Weight Heparin Based on Mass Spectrometry 期刊论文
FRONTIERS IN CHEMISTRY, 2021, 卷号: 9, 页码: 13
作者:  Wang, Hui;  Wang, Yu;  Hou, Meijie;  Zhang, Chunming;  Wang, Yaojun;  Guo, Zhendong;  Bu, Dongbo;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
LMWHs  mass spectrometry  glycosaminoglycans  isotopic distribution  computational method  
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：29/0  |  提交时间：2021/12/01
Protein structure  Secondary structure elements  Inter-SSE contacts  
Multistage mass spectrometry with intelligent precursor selection for N-glycan branching pattern analysis 期刊论文
CARBOHYDRATE POLYMERS, 2020, 卷号: 237, 页码: 12
作者:  Huang, Chuncui;  Wang, Hui;  Bu, Dongbo;  Zhou, Jinyu;  Dong, Junchuan;  Zhang, Jingwei;  Gao, Huanyu;  Wang, Yaojun;  Chai, Wengang;  Sun, Shiwei;  Li, Yan
收藏  |  浏览/下载：73/0  |  提交时间：2020/12/10
Intelligent precursor selection  N-gGlycan branching pattern  Multistage mass spectrometry  Distinctive fragments  Hypothesis and significance test  
Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis 期刊论文
JOURNAL OF PROTEOMICS, 2020, 卷号: 217, 页码: 7
作者:  Wang, Hui;  Zhang, Jingwei;  Dong, Junchuan;  Hou, Meijie;  Pan, Weiyi;  Bu, Dongbo;  Zhou, Jinyu;  Zhang, Qi;  Wang, Yaojun;  Zhao, Keli;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：58/0  |  提交时间：2020/12/10
Multi-stage mass spectrometry  Glycan branching pattern  Glycan identification  Spectra tree  Isomeric glycan  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：45/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization