中国科学院计算技术研究所机构知识库

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限定条件	资助项目：National Key Research and Development Program of China[2016YFA0501300]

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	Validation Methods of Peptide Identification Results in Proteomics* 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min 收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文 PROTEOMICS, 2020, 页码: 9 作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao 收藏  |  浏览/下载：52/0  |  提交时间：2020/12/10 cooperative game  deep learning  proteomics  sequence tag generation
	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
	pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文 BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190 作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min 收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
	pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758 作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16 tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate
	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文 NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+ 作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min 收藏  |  浏览/下载：84/0  |  提交时间：2019/08/16