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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：4/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Towards interpretable imaging genomics analysis: Methodological developments and applications 期刊论文
INFORMATION FUSION, 2024, 卷号: 102, 页码: 18
作者:  Cen, Xiaoping;  Dong, Wei;  Lv, Wei;  Zhao, Yi;  Dubee, Fred;  Mentis, Alexios-Fotios A.;  Jovic, Dragomirka;  Yang, Huanming;  Li, Yixue
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Interpretability  Imaging genomics  Genotype -phenotype association  Precision medicine  
Local Feature Matters: Cascade Multi-Scale MLP for Edge Segmentation of Medical Images 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2023, 卷号: 22, 期号: 4, 页码: 828-835
作者:  Lv, Jinkai;  Hu, Yuyong;  Fu, Quanshui;  Hu, Yuqiang;  Lv, Lin;  Yang, Guoqing;  Li, Jinpeng;  Zhao, Yi
收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04
MLP  medical image segmentation  semantic segmentation  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
Systematic Survey of the Alteration of the Faecal Microbiota in Rats With Gastrointestinal Disorder and Modulation by Multicomponent Drugs 期刊论文
FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13
作者:  Wu, Yue;  Wu, Yang;  Wu, Hongwei;  Wu, Changxun;  Ji, Enhui;  Xu, Jing;  Zhang, Yi;  Wei, Junying;  Zhao, Yi;  Yang, Hongjun
收藏  |  浏览/下载：28/0  |  提交时间：2022/06/21
XEFP  functional dyspepsia  intestinal flora  metabonomics  network pharmacology  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
Tumor cells generate astrocyte-like cells that contribute to SHH-driven medulloblastoma relapse 期刊论文
JOURNAL OF EXPERIMENTAL MEDICINE, 2021, 卷号: 218, 期号: 9, 页码: 22
作者:  Guo, Duancheng;  Wang, Yuan;  Cheng, Yan;  Liao, Shengyou;  Hu, Jian;  Du, Fang;  Xu, Gang;  Liu, Yongqiang;  Cai, Kathy Q.;  Cheung, Martin;  Wainwright, Brandon J.;  Lu, Q. Richard;  Zhao, Yi;  Yang, Zeng-jie
收藏  |  浏览/下载：47/0  |  提交时间：2021/12/01
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W459-W468
作者:  Zhang, Yuwei;  Bu, Dechao;  Huo, Peipei;  Wang, Zhihao;  Rong, Hao;  Li, Yanguo;  Liu, Jingjia;  Ye, Meng;  Wu, Yang;  Jiang, Zheng;  Liao, Qi;  Zhao, Yi
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01