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Characterization of collision-induced dissociation of deprotonated peptides of 4-16 amino acids using high-resolution mass spectrometry 期刊论文
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2019, 卷号: 445, 页码: 8
作者:  Zuo, Mei-Qing;  Sun, Rui-Xiang;  Fang, Run-Qian;  He, Si-Min;  Dong, Meng-Qiu
收藏  |  浏览/下载：258/0  |  提交时间：2019/12/10
Negative-ion mass spectrometry  Peptide fragmentation  Collision-induced dissociation (CID)  Higher-energy collisional dissociation (HCD)  Fragmentation efficiency  
Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Jones, Alexander X.;  Cao, Yong;  Tangi, Yu-Liang;  Wang, Jian-Hua;  Ding, Yue-He;  Tan, Hui;  Chen, Zhen-Lin;  Fang, Run-Qian;  Yin, Jili;  Chen, Rong-Chang;  Zhu, Xing;  She, Yang;  Huang, Niu;  Shao, Feng;  Ye, Keqiong;  Sun, Rui-Xiang;  He, Si-Min;  Lei, Xiaoguang;  Dong, Meng-Qiu
收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
Best-first search guided multistage mass spectrometry-based glycan identification 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 17, 页码: 2991-2997
作者:  Wang, Yaojun;  Bu, Dongbo;  Huang, Chuncui;  Wang, Hui;  Zhou, Jinyu;  Dong, Junchuan;  Pan, Weiyi;  Zhang, Jingwei;  Zhang, Qi;  Li, Yan;  Sun, Shiwei
收藏  |  浏览/下载：82/0  |  提交时间：2019/12/10
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731
作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min
收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition 期刊论文
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2019, 卷号: 30, 期号: 8, 页码: 1396-1405
作者:  Li, Wenxue;  Chi, Hao;  Salovska, Barbora;  Wu, Chongde;  Sun, Liangliang;  Rosenberger, George;  Liu, Yansheng
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
Data-independent acquisition  Isolation windows  Maxquant  pFind  Spectronaut  
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
De novo glycan structural identification from mass spectra using tree merging strategy 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 卷号: 80, 页码: 217-224
作者:  Ju, Fusong;  Zhang, Jingwei;  Bu, Dongbo;  Li, Yan;  Zhou, Jinyu;  Wang, Hui;  Wang, Yaojun;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：269/0  |  提交时间：2019/08/16
Global Quantification of Intact Proteins via Chemical Isotope Labeling and Mass Spectrometry 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 5, 页码: 2185-2194
作者:  Liu, Zheyi;  Wang, Ruimin;  Liu, Jing;  Sun, Ruixiang;  Wang, Fangjun
收藏  |  浏览/下载：73/0  |  提交时间：2019/08/16
mass spectrometry  chemical isotope labeling  intact protein quantification  pTOP  highest isotopic peak