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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：4/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文
JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134
作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W317-W325
作者:  Bu, Dechao;  Luo, Haitao;  Huo, Peipei;  Wang, Zhihao;  Zhang, Shan;  He, Zihao;  Wu, Yang;  Zhao, Lianhe;  Liu, Jingjia;  Guo, Jincheng;  Fang, Shuangsang;  Cao, Wanchen;  Yi, Lan;  Zhao, Yi;  Kong, Lei
收藏  |  浏览/下载：56/0  |  提交时间：2021/12/01
FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 62-71
作者:  Bu, Dechao;  Xia, Yan;  Zhang, JiaYuan;  Cao, Wanchen;  Huo, Peipei;  Wang, Zhihao;  He, Zihao;  Ding, Linyi;  Wu, Yang;  Zhang, Shan;  Gao, Kai;  Yu, He;  Liu, Tiegang;  Ding, Xia;  Gu, Xiaohong;  Zhao, Yi
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Formulas  Herb  Symptom  TCM  
DeepOmix: A scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 2719-2725
作者:  Zhao, Lianhe;  Dong, Qiongye;  Luo, Chunlong;  Wu, Yang;  Bu, Dechao;  Qi, Xiaoning;  Luo, Yufan;  Zhao, Yi
收藏  |  浏览/下载：43/0  |  提交时间：2021/12/01
Multi-omics  Deep learning  Survival analysis  Prognosis prediction  Interpretable model  
CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation 期刊论文
FEBS LETTERS, 2019, 卷号: 593, 期号: 11, 页码: 1179-1189
作者:  Li, Lin;  Bu, Dechao;  Zhao, Yi
收藏  |  浏览/下载：275/0  |  提交时间：2019/08/16
abundance  circRNA  circRNAwrap  detection  transcript  
Identification and function annotation of long intervening noncoding RNAs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2017, 卷号: 18, 期号: 5, 页码: 789-797
作者:  Luo, Haitao;  Bu, Dechao;  Sun, Liang;  Fang, Shuangsang;  Liu, Zhiyong;  Zhao, Yi
收藏  |  浏览/下载：66/0  |  提交时间：2019/12/12
transcriptom sequencing  noncoding RNAs  gene identification  function annotation  network analysis  computational method  
Phenotype-Genotype Association Analysis of ACTH-Secreting Pituitary Adenoma and Its Molecular Link to Patient Osteoporosis 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2016, 卷号: 17, 期号: 10, 页码: 16
作者:  Wang, Renzhi;  Yang, Yakun;  Sheng, Miaomiao;  Bu, Dechao;  Huang, Fengming;  Liu, Xiaohai;  Zhou, Cuiqi;  Dai, Congxin;  Sun, Bowen;  Zhu, Jindong;  Qiao, Yi;  Yao, Yong;  Zhu, Huijuan;  Lu, Lin;  Pan, Hui;  Feng, Ming;  Deng, Kan;  Xing, Bing;  Lian, Wei;  Zhao, Yi;  Jiang, Chengyu
收藏  |  浏览/下载：67/0  |  提交时间：2019/12/13
Adrenocorticotrophin (ACTH)-secreting pituitary adenoma  phenotype  genotype  osteoporosis