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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:35/0  |  提交时间:2021/12/01
TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary 期刊论文
CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 444-449
作者:  Wang, Yaojun;  Zhang, Jingwei;  Bu, Dongbo;  Sun, Shiwei
收藏  |  浏览/下载:66/0  |  提交时间:2019/12/10
Mass spectrometry  theoretical spectrum prediction  database search  peptide identification  TagDict  MassAnalyzer  
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 11
作者:  Gong, Hai'e;  Zhang, Haicang;  Zhu, Jianwei;  Wang, Chao;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/12
Protein structure  Burial states of residue  Conditional random field  Residue correlation