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pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载:39/0  |  提交时间:2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning 期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 14, 页码: 5815-5822
作者:  Tarn, Ching;  Zeng, Wen-Feng
收藏  |  浏览/下载:36/0  |  提交时间:2021/12/01
Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814
作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping
收藏  |  浏览/下载:46/0  |  提交时间:2021/12/01
Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues  
GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文
PROTEOMICS, 2020, 页码: 9
作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao
收藏  |  浏览/下载:58/0  |  提交时间:2020/12/10
cooperative game  deep learning  proteomics  sequence tag generation  
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition 期刊论文
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2019, 卷号: 30, 期号: 8, 页码: 1396-1405
作者:  Li, Wenxue;  Chi, Hao;  Salovska, Barbora;  Wu, Chongde;  Sun, Liangliang;  Rosenberger, George;  Liu, Yansheng
收藏  |  浏览/下载:78/0  |  提交时间:2019/12/10
Data-independent acquisition  Isolation windows  Maxquant  pFind  Spectronaut  
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载:78/0  |  提交时间:2019/12/10
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文
NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+
作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min
收藏  |  浏览/下载:92/0  |  提交时间:2019/08/16
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data (Reprinted from vol 125, pg 89-97, 2015) 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 129, 页码: 33-41
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:59/0  |  提交时间:2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS  
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 125, 页码: 89-97
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:65/0  |  提交时间:2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS  
Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs 期刊论文
BMC Bioinformatics, 2014, 卷号: 15, 期号: 1
作者:  Li,You;  Chi,Hao;  Xia,Leihao;  Chu,Xiaowen
收藏  |  浏览/下载:49/0  |  提交时间:2019/08/16