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Optical Genome Mapping Reveals the Landscape of Structural Variations and Their Clinical Significance in HBOC-Related Breast Cancer 期刊论文
FRONTIERS IN BIOSCIENCE-LANDMARK, 2024, 卷号: 29, 期号: 1, 页码: 1-15
作者:  Cheng, Yanan;  Dong, Li;  Bu, Dechao;  Han, Lei;  Zhao, Yi;  Liu, Juntian;  Guo, Xiaojing;  Xu, Hanli;  Yu, Jinpu
收藏  |  浏览/下载：14/0  |  提交时间：2024/05/20
HBOC  breast cancer  optical genome mapping  structural variation  BRCA1/2  chromothripsis  
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Huang,Bin;  Wei,Guozheng;  Wang,Bing;  Ju,Fusong;  Zhong,Yi;  Shi,Zhuozheng;  Sun,Shiwei;  Bu,Dongbo
收藏  |  浏览/下载：50/0  |  提交时间：2021/12/01
Genome assembly  Gap filling  Scaffolding  Optical maps  Probabilistic search  
SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2021, 页码: 15
作者:  Gu, Wenyan;  Zhou, Aizhong;  Wang, Lusheng;  Sun, Shiwei;  Cui, Xuefeng;  Zhu, Daming
收藏  |  浏览/下载：47/0  |  提交时间：2021/12/01
genome structural variant  genome structural variant detection  long-read sequencing and single-molecule sequencing  third-generation sequencing  
A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplication 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2020, 页码: 3
作者:  Zhang, Junpei;  Zhang, Wenting;  Ji, Feiyang;  Qiu, Jie;  Song, Xiaobo;  Bu, Dechao;  Pan, Gang;  Ma, Qingguo;  Chen, Jiaxin;  Huang, Ruimin;  Chang, Yingying;  Pei, Dong
收藏  |  浏览/下载：59/0  |  提交时间：2020/12/10
genome  Juglans  WGD  
SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores 期刊论文
BMC Bioinformatics, 2014, 卷号: 15, 期号: Suppl 9
作者:  Meng,Jintao;  Wang,Bingqiang;  Wei,Yanjie;  Feng,Shengzhong;  Balaji,Pavan
收藏  |  浏览/下载：55/0  |  提交时间：2019/08/16
genome assembly  parallel computing  De Bruijn graph  
A genome-wide microsatellite polymorphism database for the Indica and Japonica rice 期刊论文
DNA RESEARCH, 2007, 卷号: 14, 期号: 1, 页码: 37-45
作者:  Zhang, Zhonghua;  Deng, Yajun;  Tan, Jun;  Hu, Songnian;  Yu, Jun;  Xue, Qingzhong
收藏  |  浏览/下载：46/0  |  提交时间：2019/12/16
polymorphism  microsatellite or MS  database  whole-genome sequences  rice  
A draft sequence of the rice (Oryza sativa ssp indica) genome 期刊论文
CHINESE SCIENCE BULLETIN, 2001, 卷号: 46, 期号: 23, 页码: 1937-1942
作者:  Yu, J;  Hu, SN;  Wang, J;  Li, SG;  Wong, KSG;  Liu, B;  Deng, Y;  Dai, L;  Zhou, Y;  Zhang, XQ;  Cao, ML;  Liu, J;  Sun, JD;  Tang, JB;  Chen, YJ;  Huang, XB;  Lin, W;  Ye, C;  Tong, W;  Cong, LJ;  Geng, JN;  Han, YJ;  Li, L;  Li, W;  Hu, GQ;  Huang, XG;  Li, WJ;  Li, J;  Liu, ZW;  Li, L;  Liu, JP;  Qi, QH;  Liu, JS;  Li, L;  Wang, XG;  Lu, H;  Wu, TT;  Zhu, M;  Ni, PX;  Han, H;  Dong, W;  Ren, XY;  Feng, XL;  Cui, P;  Li, XR;  Wang, H;  Xu, X;  Zhai, WX;  Xu, Z;  Zhang, JS;  He, SJ;  Zhang, JG;  Xu, JC;  Zhang, KL;  Zheng, XW;  Dong, JH;  Zeng, WY;  Tao, L;  Chen, XW;  He, J;  Liu, DF;  Tian, W;  Tian, CG;  Xia, HG;  Li, G;  Gao, H;  Li, P;  Chen, W;  Wang, XD;  Zhang, Y;  Hu, JF;  Wang, J;  Liu, S;  Yang, J;  Zhang, GY;  Xiong, YQ;  Li, ZJ;  Mao, L;  Zhou, CS;  Zhu, Z;  Chen, RS;  Hao, BL;  Zheng, WM;  Chen, SY;  Guo, W;  Li, GJ;  Liu, SQ;  Huang, GY;  Tao, M;  Wang, J;  Zhu, LH;  Yuan, LP;  Yang, HM
收藏  |  浏览/下载：93/0  |  提交时间：2019/12/16
rice  genome  draft sequences