A genome-wide microsatellite polymorphism database for the Indica and Japonica rice

doi:10.1093/dnares/dsm005

	A genome-wide microsatellite polymorphism database for the Indica and Japonica rice
	Zhang, Zhonghua ; Deng, Yajun ; Tan, Jun ; Hu, Songnian ; Yu, Jun ; Xue, Qingzhong
	2007-02-28
发表期刊	DNA RESEARCH
ISSN	1340-2838
卷号	14 期号:1 页码:37-45
摘要	Microsatellite (MS) polyinorphism is an important source of genetic diversity, providing support for map-based cloning and molecular breeding. We have developed a new database that contains 52 845 polyniorphic MS loci between indica and japonica, composed of ample Class II MS markers, and integrated IS 828 MS loci from IRGSP and genetic markers from RGP. Based on genetic marker positions on the rice genome (http://rise.genomics.org.cn/ rice2/index.jsp), we determined the approximate genetic distances of these MS loci and validated 100 randomly selected markers experimentally with 90% success rate. In addition, we recorded polymorphic MS positions in indica, cv. 9311 that is the most important paternal parent of the two-line hybrid rice in China. Our database will undoubtedly facilitate the application of MS markers in genetic researches and marker-assisted breeding. The data set is freely available from www.wigs.zju.edu.cn/achievrnerit/polySSR.
关键词	polymorphism microsatellite or MS database whole-genome sequences rice
DOI	10.1093/dnares/dsm005
收录类别	SCI
语种	英语
WOS研究方向	Genetics & Heredity
WOS类目	Genetics & Heredity
WOS记录号	WOS:000248042500004
出版者	OXFORD UNIV PRESS
引用统计	被引频次：71[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/11026
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Xue, Qingzhong
作者单位	1.Zhejiang Univ, James D Watson Inst Genome Sci, Hangzhou 310008, Peoples R China 2.Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing 101300, Peoples R China 3.Chinese Acad Sci, Inst Comp Technol, Beijing 101300, Peoples R China 4.Chongqing Univ Posts & Telecommun, Inst Bioinformat, Chongqing 400065, Peoples R China 5.Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China 6.Zhejiang Univ, Coll Agr & Biotechnol, Dept Agron, Hangzhou 310029, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Zhonghua,Deng, Yajun,Tan, Jun,et al. A genome-wide microsatellite polymorphism database for the Indica and Japonica rice[J]. DNA RESEARCH,2007,14(1):37-45.
APA	Zhang, Zhonghua,Deng, Yajun,Tan, Jun,Hu, Songnian,Yu, Jun,&Xue, Qingzhong.(2007).A genome-wide microsatellite polymorphism database for the Indica and Japonica rice.DNA RESEARCH,14(1),37-45.
MLA	Zhang, Zhonghua,et al."A genome-wide microsatellite polymorphism database for the Indica and Japonica rice".DNA RESEARCH 14.1(2007):37-45.