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JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载：12/0  |  提交时间：2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
Evaluation of CircRNA sequence assembly methods using long reads (vol 13, 816825, 2022) 期刊论文
FRONTIERS IN GENETICS, 2023, 卷号: 14, 页码: 1
作者:  Zhang, Jingjing;  Hossain, Md. Tofazzal;  Liu, Weiguo;  Peng, Yin;  Pan, Yi;  Wei, Yanjie
收藏  |  浏览/下载：18/0  |  提交时间：2023/12/04
circRNA  full-length sequences  short reads  long reads  assembly  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：15/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 23
作者:  Yang, Zhen;  Xu, Feng;  Teschendorff, Andrew E.;  Zhao, Yi;  Yao, Lei;  Li, Jian;  He, Yungang
收藏  |  浏览/下载：22/0  |  提交时间：2023/07/12
lncRNA  circRNA  DNA methylation  histone modification  transcriptional regulation  regulatory network  
Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15
作者:  Hossain, Md. Tofazzal;  Zhang, Jingjing;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：29/0  |  提交时间：2022/12/07
circular RNA  reconstruction of circRNA sequence  full-length sequence  
Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：28/0  |  提交时间：2022/12/07
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Evaluation of CircRNA Sequence Assembly Methods Using Long Reads 期刊论文
FRONTIERS IN GENETICS, 2022, 卷号: 13, 页码: 12
作者:  Zhang, Jingjing;  Hossain, Md. Tofazzal;  Liu, Weiguo;  Peng, Yin;  Pan, Yi;  Wei, Yanjie
收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
circRNA  full-length sequences  short reads  long reads  assembly  
A novel protein AXIN1-295aa encoded by circAXIN1 activates the Wnt/beta-catenin signaling pathway to promote gastric cancer progression 期刊论文
MOLECULAR CANCER, 2021, 卷号: 20, 期号: 1, 页码: 19
作者:  Peng, Yin;  Xu, Yidan;  Zhang, Xiaojing;  Deng, Shiqi;  Yuan, Yuan;  Luo, Xiaonuan;  Hossain, Md Tofazzal;  Zhu, Xiaohui;  Du, Kaining;  Hu, Fan;  Chen, Yang;  Chang, Shanshan;  Feng, Xianling;  Fan, Xinmin;  Ashktorab, Hassan;  Smoot, Duane;  Meltzer, Stephen J.;  Hou, Gangqiang;  Wei, Yanjie;  Li, Song;  Qin, Ying;  Jin, Zhe
收藏  |  浏览/下载：42/0  |  提交时间：2022/06/21
AXIN1  Wnt  Translation  circRNA  
CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation 期刊论文
FEBS LETTERS, 2019, 卷号: 593, 期号: 11, 页码: 1179-1189
作者:  Li, Lin;  Bu, Dechao;  Zhao, Yi
收藏  |  浏览/下载：284/0  |  提交时间：2019/08/16
abundance  circRNA  circRNAwrap  detection  transcript