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pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载:80/0  |  提交时间:2019/12/10
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载:256/0  |  提交时间:2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 4, 页码: 773-785
作者:  Yang, Hao;  Li, Yan-Chang;  Zhao, Ming-Zhi;  Wu, Fei-Lin;  Wang, Xi;  Xiao, Wei-Di;  Wang, Yi-Hao;  Zhang, Jun-Ling;  Wang, Fu-Qiang;  Xu, Feng;  Zengt, Wen-Feng;  Overall, Christopher M.;  He, Si-Min;  Chi, Hao;  Xu, Ping
收藏  |  浏览/下载:286/0  |  提交时间:2019/08/16
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文
NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+
作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min
收藏  |  浏览/下载:95/0  |  提交时间:2019/08/16
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min
收藏  |  浏览/下载:82/0  |  提交时间:2019/12/10
tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation  
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 14
作者:  Liu, Ming-Qi;  Zeng, Wen-Feng;  Fang, Pan;  Cao, Wei-Qian;  Liu, Chao;  Yan, Guo-Quan;  Zhang, Yang;  Peng, Chao;  Wu, Jian-Qiang;  Zhang, Xiao-Jin;  Tu, Hui-Jun;  Chi, Hao;  Sun, Rui-Xiang;  Cao, Yong;  Dong, Meng-Qiu;  Jiang, Bi-Yun;  Huang, Jiang-Ming;  Shen, Hua-Li;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Peng-Yuan
收藏  |  浏览/下载:88/0  |  提交时间:2019/12/12
Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min
收藏  |  浏览/下载:58/0  |  提交时间:2019/12/12
tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications