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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载:16/0  |  提交时间:2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Histopathological bladder cancer gene mutation prediction with hierarchical deep multiple-instance learning 期刊论文
MEDICAL IMAGE ANALYSIS, 2023, 卷号: 87, 页码: 13
作者:  Yan, Rui;  Shen, Yijun;  Zhang, Xueyuan;  Xu, Peihang;  Wang, Jun;  Li, Jintao;  Ren, Fei;  Ye, Dingwei;  Zhou, S. Kevin
收藏  |  浏览/下载:24/0  |  提交时间:2023/12/04
Bladder cancer  Contrastive learning  Gene mutation prediction  Histopathological image analysis  Multiple instance learning  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载:18/0  |  提交时间:2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
Immunohistochemical HER2 Recognition and Analysis of Breast Cancer Based on Deep Learning 期刊论文
DIAGNOSTICS, 2023, 卷号: 13, 期号: 2, 页码: 14
作者:  Che, Yuxuan;  Ren, Fei;  Zhang, Xueyuan;  Cui, Li;  Wu, Huanwen;  Zhao, Ze
收藏  |  浏览/下载:21/0  |  提交时间:2023/07/12
breast cancer  HER2  IHC  whole-slide image  deep learning  
Divide-and-Attention Network for HE-Stained Pathological Image Classification 期刊论文
BIOLOGY-BASEL, 2022, 卷号: 11, 期号: 7, 页码: 17
作者:  Yan, Rui;  Yang, Zhidong;  Li, Jintao;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载:34/0  |  提交时间:2022/12/07
pathological image classification  attention mechanism  convolutional neural network  knowledge embedding  
Cross Analysis of Genomic-Pathologic Features on Multiple Primary Hepatocellular Carcinoma 期刊论文
FRONTIERS IN GENETICS, 2022, 卷号: 13, 页码: 9
作者:  Ren, Fei;  Wang, Depin;  Zhang, Xueyuan;  Zhao, Na;  Wang, Xiaowen;  Zhang, Yu;  Li, Li
收藏  |  浏览/下载:21/0  |  提交时间:2023/07/12
hepatocellular carcinoma  whole exome sequencing  whole slide images  molecular profiling and subtyping  hepatitis B virus  
Nuclei-Guided Network for Breast Cancer Grading in HE-Stained Pathological Images 期刊论文
SENSORS, 2022, 卷号: 22, 期号: 11, 页码: 15
作者:  Yan, Rui;  Ren, Fei;  Li, Jintao;  Rao, Xiaosong;  Lv, Zhilong;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载:34/0  |  提交时间:2022/12/07
breast cancer grading  histopathological image  nuclei segmentation  convolutional neural network  attention mechanism  
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14
作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa
收藏  |  浏览/下载:20/0  |  提交时间:2023/07/12
Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks