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Multi-labelled proteins recognition for high-throughput microscopy images using deep convolutional neural networks 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: SUPPL 3, 页码: 14
作者:  Zhang, Enze;  Zhang, Boheng;  Hu, Shaohan;  Zhang, Fa;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载：47/0  |  提交时间：2021/12/01
Protein pattern recognition  DNNs  Multi-class and multi-label  Label imbalance  High-throughput microscopy images  
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 页码: 19
作者:  Li, Lun;  Han, Renmin;  Zhang, Zhaotian;  Guo, Tiande;  Liu, Zhiyong;  Zhang, Fa
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
Electron tomography  Compressed sensing  Matching pursuit  Iterative reconstruction-reprojection  
Live-SIMBA: an ImageJ plug-in for the universal and accelerated single molecule-guided Bayesian localization super resolution microscopy (SIMBA) method 期刊论文
BIOMEDICAL OPTICS EXPRESS, 2020, 卷号: 11, 期号: 10, 页码: 5842-5859
作者:  Li, Hongjia;  Xu, Fan;  Gao, Shan;  Zhang, Mingshu;  Xue, Fudong;  Xu, Pingyong;  Zhang, Fa
收藏  |  浏览/下载：61/0  |  提交时间：2020/12/10
A Parallel Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Heterogeneous Markov Random Field 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2020, 卷号: 19, 期号: 3, 页码: 538-546
作者:  Lv, Zhilong;  Mi, Fubo;  Wu, Zhongke;  Zhu, Yicheng;  Liu, Xinyu;  Tian, Mei;  Zhang, Fa;  Wang, Xingce;  Wan, Xiaohua
收藏  |  浏览/下载：64/0  |  提交时间：2020/12/10
Gaussian distribution  Image segmentation  Particle swarm optimization  Optimization  Histograms  Markov random fields  Robustness  Three-dimensional cerebrovascular segmentation  focused multi-Gaussians model  Chaotic oscillation particle swarm optimization  Markov random field  
Breast cancer histopathological image classification using a hybrid deep neural network 期刊论文
METHODS, 2020, 卷号: 173, 页码: 52-60
作者:  Yan, Rui;  Ren, Fei;  Wang, Zihao;  Wang, Lihua;  Zhang, Tong;  Liu, Yudong;  Rao, Xiaosong;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：55/0  |  提交时间：2020/12/10
Breast cancer  Histopathological images  Image classification  Deep neural network  Dataset  
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2019, 页码: 11
作者:  Wang, Zihao;  Zhang, Jingrong;  Gao, Weifang;  Liu, Zhiyong;  Wan, Xiaohua;  Zhang, Fa
收藏  |  浏览/下载：51/0  |  提交时间：2020/12/10
consensus optimization  cryoelectron tomography  multiple-tilt reconstruction  parallel computing  TxBR  
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 2, 页码: 319-328
作者:  Han, Renmin;  Wan, Xiaohua;  Li, Lun;  Lawrence, Albert;  Yang, Peng;  Li, Yu;  Wang, Sheng;  Sun, Fei;  Liu, Zhiyong;  Gao, Xin;  Zhang, Fa
收藏  |  浏览/下载：81/0  |  提交时间：2019/04/03
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：79/0  |  提交时间：2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载：59/0  |  提交时间：2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Live cell single molecule-guided Bayesian localization super resolution microscopy 期刊论文
CELL RESEARCH, 2017, 卷号: 27, 期号: 5, 页码: 713-716
作者:  Xu, Fan;  Zhang, Mingshu;  He, Wenting;  Han, Renmin;  Xue, Fudong;  Liu, Zhiyong;  Zhang, Fa;  Lippincott-Schwartz, Jennifer;  Xu, Pingyong
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12