中国科学院计算技术研究所机构知识库

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	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：102/0  |  提交时间：2019/12/10
	pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文 BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190 作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min 收藏  |  浏览/下载：80/0  |  提交时间：2019/12/10
	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文 NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+ 作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min 收藏  |  浏览/下载：95/0  |  提交时间：2019/08/16
	pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min 收藏  |  浏览/下载：82/0  |  提交时间：2019/12/10 tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation
	pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning 期刊论文 ANALYTICAL CHEMISTRY, 2017, 卷号: 89, 期号: 23, 页码: 12690-12697 作者:  Zhou, Xie-Xuan;  Zeng, Wen-Feng;  Chi, Hao;  Luo, Chunjie;  Liu, Chao;  Zhan, Jianfeng;  He, Si-Min;  Zhang, Zhifei 收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
	Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min 收藏  |  浏览/下载：58/0  |  提交时间：2019/12/12 tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications