中国科学院计算技术研究所机构知识库

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	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：102/0  |  提交时间：2019/12/10
	pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758 作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：256/0  |  提交时间：2019/08/16 tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate
	6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 14 作者:  He, Shunmin;  Zhang, Guoqiang;  Wang, Jiajia;  Gao, Yajie;  Sun, Ruidi;  Cao, Zhijie;  Chen, Zhenping;  Zheng, Xiudeng;  Yuan, Jiao;  Luo, Yuewan;  Wang, Xiaona;  Zhang, Wenxin;  Zhang, Peng;  Zhao, Yi;  He, Chuan;  Tao, Yi;  Sun, Qinmiao;  Chen, Dahua 收藏  |  浏览/下载：90/0  |  提交时间：2019/08/16
	Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics 期刊论文 MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 4, 页码: 773-785 作者:  Yang, Hao;  Li, Yan-Chang;  Zhao, Ming-Zhi;  Wu, Fei-Lin;  Wang, Xi;  Xiao, Wei-Di;  Wang, Yi-Hao;  Zhang, Jun-Ling;  Wang, Fu-Qiang;  Xu, Feng;  Zengt, Wen-Feng;  Overall, Christopher M.;  He, Si-Min;  Chi, Hao;  Xu, Ping 收藏  |  浏览/下载：286/0  |  提交时间：2019/08/16
	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文 NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+ 作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min 收藏  |  浏览/下载：95/0  |  提交时间：2019/08/16
	pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning 期刊论文 ANALYTICAL CHEMISTRY, 2017, 卷号: 89, 期号: 23, 页码: 12690-12697 作者:  Zhou, Xie-Xuan;  Zeng, Wen-Feng;  Chi, Hao;  Luo, Chunjie;  Liu, Chao;  Zhan, Jianfeng;  He, Si-Min;  Zhang, Zhifei 收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
	pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification 期刊论文 NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 14 作者:  Liu, Ming-Qi;  Zeng, Wen-Feng;  Fang, Pan;  Cao, Wei-Qian;  Liu, Chao;  Yan, Guo-Quan;  Zhang, Yang;  Peng, Chao;  Wu, Jian-Qiang;  Zhang, Xiao-Jin;  Tu, Hui-Jun;  Chi, Hao;  Sun, Rui-Xiang;  Cao, Yong;  Dong, Meng-Qiu;  Jiang, Bi-Yun;  Huang, Jiang-Ming;  Shen, Hua-Li;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Peng-Yuan 收藏  |  浏览/下载：88/0  |  提交时间：2019/12/12
	Parallel Processing Systems for Big Data: A Survey 期刊论文 PROCEEDINGS OF THE IEEE, 2016, 卷号: 104, 期号: 11, 页码: 2114-2136 作者:  Zhang, Yunquan;  Cao, Ting;  Li, Shigang;  Tian, Xinhui;  Yuan, Liang;  Jia, Haipeng;  Vasilakos, Athanasios V. 收藏  |  浏览/下载：62/0  |  提交时间：2019/12/13 Big data  machine learning  MapReduce  parallel processing  SQL  survey
	Increasing the Depth of Mass-Spectrometry-Based Structural Analysis of Protein Complexes through the Use of Multiple Cross-Linkers 期刊论文 ANALYTICAL CHEMISTRY, 2016, 卷号: 88, 期号: 8, 页码: 4461-4469 作者:  Ding, Yue-He;  Fan, Sheng-Bo;  Li, Shuang;  Feng, Bo-Ya;  Gao, Ning;  Ye, Keqiong;  He, Si-Min;  Dong, Meng-Qiu 收藏  |  浏览/下载：65/0  |  提交时间：2019/12/13