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GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states 期刊论文
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:  Liu, Fan;  Zhou, Han;  Li, Xiaonong;  Zhou, Liangliang;  Yu, Chungong;  Zhang, Haicang;  Bu, Dongbo;  Liang, Xinmiao
收藏  |  浏览/下载：1/0  |  提交时间：2024/12/06
G-protein coupled receptor  State-specific structure  Binding site  Key residue  Database  
Accurate and robust protein sequence design with CarbonDesign 期刊论文
NATURE MACHINE INTELLIGENCE, 2024, 卷号: 6, 期号: 5, 页码: 14
作者:  Ren, Milong;  Yu, Chungong;  Bu, Dongbo;  Zhang, Haicang
收藏  |  浏览/下载：7/0  |  提交时间：2024/12/06
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：10/0  |  提交时间：2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Microblog-HAN: A micro-blog rumor detection model based on heterogeneous graph attention network 期刊论文
PLOS ONE, 2022, 卷号: 17, 期号: 4, 页码: 18
作者:  Bi, Bei;  Wang, Yaojun;  Zhang, Haicang;  Gao, Yang
收藏  |  浏览/下载：28/0  |  提交时间：2022/12/07
FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：46/0  |  提交时间：2021/12/01
Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning (vol 20, 537, 2019) 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 5
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：51/0  |  提交时间：2020/12/10
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：53/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:  Wang, Chao;  Wei, Yi;  Zhang, Haicang;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：90/0  |  提交时间：2019/08/16
Protein structure prediction  Energy function  Attraction-basin  Reverse Monte Carlo sampling  Monte Carlo search  Linear program  
蛋白质三级结构预测算法综述 期刊论文
计算机学报, 2018, 卷号: 41.0, 期号: 004, 页码: 760
作者:  王超;  朱建伟;  张海仓;  巩海娥;  郑伟谋;  卜东波
收藏  |  浏览/下载：14/0  |  提交时间：2023/12/04
蛋白质结构  同源建模  归范法  从头预测法  能量函数  动态规划  线性规划  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：63/0  |  提交时间：2019/12/10