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A deep learning model for structure-based bioactivity optimization and its application in the bioactivity optimization of a SARS-CoV-2 main protease inhibitor 期刊论文
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2025, 卷号: 291, 页码: 16
作者:  Yang, Zhenyu;  Wang, Kai;  Zhang, Guo;  Jiang, Yuanyuan;  Zeng, Rui;  Qiao, Jingxin;  Li, Yueyue;  Deng, Xinyue;  Xia, Ziyi;  Yao, Rui;  Zeng, Xiaoxi;  Zhang, Liyun;  Zhao, Yi;  Lei, Jian;  Chen, Runsheng
收藏  |  浏览/下载：0/0  |  提交时间：2025/06/25
Structure-based bioactivity optimization  Deep-learning model  SARS-CoV-2 main protease  Molecular scaffold  Pocket-StrMod  
Breast Cancer Molecular Subtype Prediction on Pathological Images with Discriminative Patch Selection and Multi-Instance Learning 期刊论文
FRONTIERS IN ONCOLOGY, 2022, 卷号: 12, 页码: 11
作者:  Liu, Hong;  Xu, Wen-Dong;  Shang, Zi-Hao;  Wang, Xiang-Dong;  Zhou, Hai-Yan;  Ma, Ke-Wen;  Zhou, Huan;  Qi, Jia-Lin;  Jiang, Jia-Rui;  Tan, Li-Lan;  Zeng, Hui-Min;  Cai, Hui-Juan;  Wang, Kuan-Song;  Qian, Yue-Liang
收藏  |  浏览/下载：57/0  |  提交时间：2022/12/07
pathological image  weakly supervised learning  molecular subtype  breast cancer  H&E  
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：120/0  |  提交时间：2019/12/10
Trends on Methods for Prediction of Tandem Mass Spectra of Peptides 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2019, 卷号: 46, 期号: 2, 页码: 169-180
作者:  Zhou Xie-Xuan;  Ren Rui;  Gao Wan-Ling;  Huang Yun-You;  Zeng Wen-Feng;  Kong De-Fei;  Hao Tian-Shu;  Zhang Zhi-Fei;  Zhan Jian-Feng
收藏  |  浏览/下载：259/0  |  提交时间：2019/04/03
mass spectrometry  proteomics  mobile proton model  machine learning  deep learning  
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文
NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+
作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min
收藏  |  浏览/下载：110/0  |  提交时间：2019/08/16
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min
收藏  |  浏览/下载：99/0  |  提交时间：2019/12/10
tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation  
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 14
作者:  Liu, Ming-Qi;  Zeng, Wen-Feng;  Fang, Pan;  Cao, Wei-Qian;  Liu, Chao;  Yan, Guo-Quan;  Zhang, Yang;  Peng, Chao;  Wu, Jian-Qiang;  Zhang, Xiao-Jin;  Tu, Hui-Jun;  Chi, Hao;  Sun, Rui-Xiang;  Cao, Yong;  Dong, Meng-Qiu;  Jiang, Bi-Yun;  Huang, Jiang-Ming;  Shen, Hua-Li;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Peng-Yuan
收藏  |  浏览/下载：104/0  |  提交时间：2019/12/12
Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/12
tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications  
Collaborative Sensing for Heterogeneous Sensor Networks 期刊论文
JOURNAL OF INFORMATION SCIENCE AND ENGINEERING, 2016, 卷号: 32, 期号: 4, 页码: 947-968
作者:  Xiao, Kejiang;  Wang, Rui;  Cai, Cai;  Zeng, Shaohua;  Mahmood, Zahid
收藏  |  浏览/下载：69/0  |  提交时间：2019/12/13
Bayesian filtering  dynamic environments  collaboration  sampling frequency  target classification  wireless sensor networks  
Trends in Mass Spectrometry-Based Large-scale N-Glycopeptides Analysis 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2016, 卷号: 43, 期号: 6, 页码: 550-562
作者:  Zeng Wen-Feng;  Zhang Yang;  Liu Ming-Qi;  Wu Jian-Qiang;  Zhang Xiao-Jin;  Yang Hao;  Liu Chao;  Chi Hao;  Zhang Kun;  Sun Rui-Xiang;  Yang Peng-Yuan;  He Si-Min
收藏  |  浏览/下载：192/0  |  提交时间：2019/12/13
glycoproteomics  glycopeptide  glycosylation  mass spectrometry