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GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states 期刊论文
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:  Liu, Fan;  Zhou, Han;  Li, Xiaonong;  Zhou, Liangliang;  Yu, Chungong;  Zhang, Haicang;  Bu, Dongbo;  Liang, Xinmiao
收藏  |  浏览/下载:1/0  |  提交时间:2024/12/06
G-protein coupled receptor  State-specific structure  Binding site  Key residue  Database  
Accurate and robust protein sequence design with CarbonDesign 期刊论文
NATURE MACHINE INTELLIGENCE, 2024, 卷号: 6, 期号: 5, 页码: 14
作者:  Ren, Milong;  Yu, Chungong;  Bu, Dongbo;  Zhang, Haicang
收藏  |  浏览/下载:7/0  |  提交时间:2024/12/06
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:10/0  |  提交时间:2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2008, 卷号: 7, 期号: 1, 页码: 202-208
作者:  Sun, Shiwei;  Yu, Chungong;  Qiao, Yantao;  Lin, Yu;  Dong, Gongjin;  Liu, Changning;  Zhang, Lingfen;  Zhang, Zhuo;  Cai, Jinjin;  Zhang, Hong;  Bu, Dongbo
收藏  |  浏览/下载:43/0  |  提交时间:2019/12/16
protein identification  tandem mass spectrum  expectation-maximization  neutral loss probability