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A deep learning model for structure-based bioactivity optimization and its application in the bioactivity optimization of a SARS-CoV-2 main protease inhibitor 期刊论文
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2025, 卷号: 291, 页码: 16
作者:  Yang, Zhenyu;  Wang, Kai;  Zhang, Guo;  Jiang, Yuanyuan;  Zeng, Rui;  Qiao, Jingxin;  Li, Yueyue;  Deng, Xinyue;  Xia, Ziyi;  Yao, Rui;  Zeng, Xiaoxi;  Zhang, Liyun;  Zhao, Yi;  Lei, Jian;  Chen, Runsheng
收藏  |  浏览/下载：7/0  |  提交时间：2025/06/25
Structure-based bioactivity optimization  Deep-learning model  SARS-CoV-2 main protease  Molecular scaffold  Pocket-StrMod  
Adaptive and Low-Cost Traffic Engineering: A Traffic Matrix Clustering Perspective 期刊论文
IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS, 2025, 卷号: 43, 期号: 2, 页码: 510-523
作者:  Liu, Yi;  Geng, Nan;  Xu, Mingwei;  Yang, Yuan;  Dong, Enhuan;  Liu, Chenyi;  Gan, Qiaoyin;  Li, Qing;  Wu, Jianping
收藏  |  浏览/下载：7/0  |  提交时间：2025/06/25
Routing  Real-time systems  Feature extraction  Computational modeling  Clustering algorithms  Quality of service  Optimization models  Classification algorithms  Transforms  Topology  Traffic engineering  traffic matrix classification  machine learning  
Learning Critically: Selective Self-Distillation in Federated Learning on Non-IID Data 期刊论文
IEEE TRANSACTIONS ON BIG DATA, 2024, 卷号: 10, 期号: 6, 页码: 789-800
作者:  He, Yuting;  Chen, Yiqiang;  Yang, XiaoDong;  Yu, Hanchao;  Huang, Yi-Hua;  Gu, Yang
收藏  |  浏览/下载：16/0  |  提交时间：2024/12/06
Data models  Training  Servers  Collaborative work  Adaptation models  Convergence  Feature extraction  Federated learning  knowledge distillation  non-identically distributed  deep learning  catastrophic forgetting  
DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：37/0  |  提交时间：2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
HERB 2.0: an updated database integrating clinical and experimental evidence for traditional Chinese medicine 期刊论文
NUCLEIC ACIDS RESEARCH, 2024, 页码: 11
作者:  Gao, Kai;  Liu, Liu;  Lei, Shuangshuang;  Li, Zhinong;  Huo, Peipei;  Wang, Zhihao;  Dong, Lei;  Deng, Wenxin;  Bu, Dechao;  Zeng, Xiaoxi;  Li, Chun;  Zhao, Yi;  Zhang, Wei;  Wang, Wei;  Wu, Yang
收藏  |  浏览/下载：5/0  |  提交时间：2025/06/25
Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery 期刊论文
NATURE COMMUNICATIONS, 2024, 卷号: 15, 期号: 1, 页码: 19
作者:  Qi, Xiaoning;  Zhao, Lianhe;  Tian, Chenyu;  Li, Yueyue;  Chen, Zhen-Lin;  Huo, Peipei;  Chen, Runsheng;  Liu, Xiaodong;  Wan, Baoping;  Yang, Shengyong;  Zhao, Yi
收藏  |  浏览/下载：19/0  |  提交时间：2024/12/06
GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model 期刊论文
CELL RESEARCH, 2024, 页码: 16
作者:  Yang, Xiaodong;  Liu, Guole;  Feng, Guihai;  Bu, Dechao;  Wang, Pengfei;  Jiang, Jie;  Chen, Shubai;  Yang, Qinmeng;  Miao, Hefan;  Zhang, Yiyang;  Man, Zhenpeng;  Liang, Zhongming;  Wang, Zichen;  Li, Yaning;  Li, Zheng;  Liu, Yana;  Tian, Yao;  Liu, Wenhao;  Li, Cong;  Li, Ao;  Dong, Jingxi;  Hu, Zhilong;  Fang, Chen;  Cui, Lina;  Deng, Zixu;  Jiang, Haiping;  Cui, Wentao;  Zhang, Jiahao;  Yang, Zhaohui;  Li, Handong;  He, Xingjian;  Zhong, Liqun;  Zhou, Jiaheng;  Wang, Zijian;  Long, Qingqing;  Xu, Ping;  Wang, Hongmei;  Meng, Zhen;  Wang, Xuezhi;  Wang, Yangang;  Wang, Yong;  Zhang, Shihua;  Guo, Jingtao;  Zhao, Yi;  Zhou, Yuanchun;  Li, Fei;  Liu, Jing;  Chen, Yiqiang;  Yang, Ge;  Li, Xin
收藏  |  浏览/下载：19/0  |  提交时间：2024/12/06
Marine aquaculture can deliver 40% lower carbon footprints than freshwater aquaculture based on feed, energy and biogeochemical cycles 期刊论文
NATURE FOOD, 2024, 页码: 13
作者:  Shen, Lu;  Wu, Lidong;  Wei, Wei;  Yang, Yi;  MacLeod, Michael J.;  Lin, Jintai;  Song, Guodong;  Yuan, Junji;  Yang, Ping;  Wu, Lin;  Li, Mingwei;  Zhuang, Minghao
收藏  |  浏览/下载：18/0  |  提交时间：2024/12/06
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms (vol 20, pg 446, 2022) 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 卷号: 22, 期号: 1, 页码: 1
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：48/0  |  提交时间：2024/12/06
Towards interpretable imaging genomics analysis: Methodological developments and applications 期刊论文
INFORMATION FUSION, 2024, 卷号: 102, 页码: 18
作者:  Cen, Xiaoping;  Dong, Wei;  Lv, Wei;  Zhao, Yi;  Dubee, Fred;  Mentis, Alexios-Fotios A.;  Jovic, Dragomirka;  Yang, Huanming;  Li, Yixue
收藏  |  浏览/下载：35/0  |  提交时间：2023/12/04
Interpretability  Imaging genomics  Genotype -phenotype association  Precision medicine