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Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials 期刊论文
COMMUNICATIONS BIOLOGY, 2024, 卷号: 7, 期号: 1, 页码: 13
作者:  Gong, Tiansu;  Ju, Fusong;  Bu, Dongbo
收藏  |  浏览/下载：0/0  |  提交时间：2024/05/20
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：0/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
NeuralGLS: learning to guide local search with graph convolutional network for the traveling salesman problem 期刊论文
NEURAL COMPUTING & APPLICATIONS, 2023, 页码: 20
作者:  Sui, Jingyan;  Ding, Shizhe;  Xia, Boyang;  Liu, Ruizhi;  Bu, Dongbo
收藏  |  浏览/下载：6/0  |  提交时间：2023/12/04
Graph convolutional network  Guided local search  Traveling salesman problem  
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：0/0  |  提交时间：2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Dominant neoantigen verification in hepatocellular carcinoma by a single-plasmid system coexpressing patient HLA and antigen 期刊论文
JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2023, 卷号: 11, 期号: 4, 页码: 16
作者:  Chen, Pu;  Chen, Dongbo;  Bu, Dechao;  Gao, Jie;  Qin, Wanying;  Deng, Kangjian;  Ren, Liying;  She, Shaoping;  Xu, Wentao;  Yang, Yao;  Xie, Xingwang;  Liao, Weijia;  Chen, Hongsong
收藏  |  浏览/下载：5/0  |  提交时间：2023/12/04
Liver Neoplasms  Antigens  Neoplasm  Immunotherapy  Immunoassay  Immunogenicity  Vaccine  
GIPS-Mix for Accurate Identification of Isomeric Components in Glycan Mixtures Using Intelligent Group-Opting Strategy 期刊论文
ANALYTICAL CHEMISTRY, 2022, 页码: 9
作者:  Huang, Chuncui;  Hou, Meijie;  Yan, Jingyu;  Wang, Hui;  Wang, Yu;  Cao, Cuiyan;  Wang, Yaojun;  Gao, Huanyu;  Ma, Xinyue;  Zheng, Yi;  Bu, Dongbo;  Chai, Wengang;  Li, Yan;  Sun, Shiwei
收藏  |  浏览/下载：11/0  |  提交时间：2023/07/12
Microbiome Resilience and Health Implications for People in Half-Year Travel 期刊论文
FRONTIERS IN IMMUNOLOGY, 2022, 卷号: 13, 页码: 15
作者:  Cheng, Mingyue;  Liu, Hong;  Han, Maozhen;  Li, Shuai Cheng;  Bu, Dongbo;  Sun, Shiwei;  Hu, Zhiqiang;  Yang, Pengshuo;  Wang, Rui;  Liu, Yawen;  Chen, Feng;  Peng, Jianjun;  Peng, Hong;  Song, Hongxing;  Xia, Yang;  Chu, Liqun;  Zhou, Quan;  Guan, Feng;  Wu, Jing;  Tan, Guangming;  Ning, Kang
收藏  |  浏览/下载：20/0  |  提交时间：2022/12/07
travel  enterotype  microbiome  bi-directional plasticity  resilience  dietary shift  immunity  health  
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：16/0  |  提交时间：2022/12/07
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载：16/0  |  提交时间：2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor 期刊论文
ISCIENCE, 2021, 卷号: 24, 期号: 11, 页码: 15
作者:  Huang, Chuncui;  Tan, Zeshun;  Zhao, Keli;  Zou, Wenjun;  Wang, Hui;  Gao, Huanyu;  Sun, Shiwei;  Bu, Dongbo;  Chai, Wengang;  Li, Yan
收藏  |  浏览/下载：19/0  |  提交时间：2022/12/07