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GPMassSimulator: A Graphormer-Based Method for Glycopeptide MS/MS Spectra Prediction 期刊论文
ANALYTICAL CHEMISTRY, 2025, 卷号: 97, 期号: 50, 页码: 27560-27568
作者:  Ren, Yihui;  Bu, Dongbo;  Duan, Bo;  Zhang, Chunming;  Cong, Bin;  Sun, Shiwei
收藏  |  浏览/下载：0/0  |  提交时间：2026/05/25
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2025, 卷号: 42, 期号: 11, 页码: 14
作者:  Zhang, Xinru;  Ding, Shizhe;  Yu, Chungong;  Zhao, Jianquan;  Bu, Dongbo
收藏  |  浏览/下载：1/0  |  提交时间：2026/05/25
phylogenetic inference  phylogenetic tree  deep learning  
Structural basis for antibiotic resistance by chloramphenicol acetyltransferase type A in Staphylococcus aureus 期刊论文
SCIENTIFIC REPORTS, 2025, 卷号: 15, 期号: 1, 页码: 13
作者:  Wang, Kaiyue;  Chen, Junwei;  Li, Wanfang;  Wang, Min;  Fan, Tingwen;  Bu, Dongbo;  Ye, Sheng
收藏  |  浏览/下载：20/0  |  提交时间：2025/12/03
Staphylococcus aureus  Antibiotic resistance  Chloramphenicol acetyltransferase  Chloramphenicol  Fusidic acid  
A survey on deep learning-based algorithms for the traveling salesman problem 期刊论文
FRONTIERS OF COMPUTER SCIENCE, 2025, 卷号: 19, 期号: 6, 页码: 30
作者:  Sui, Jingyan;  Ding, Shizhe;  Huang, Xulin;  Yu, Yue;  Liu, Ruizhi;  Xia, Boyang;  Ding, Zhenxin;  Xu, Liming;  Zhang, Haicang;  Yu, Chungong;  Bu, Dongbo
收藏  |  浏览/下载：34/0  |  提交时间：2025/06/25
traveling salesman problem  algorithms design  deep learning  neural network  
Lossless data compression by large models 期刊论文
NATURE MACHINE INTELLIGENCE, 2025, 卷号: 7, 期号: 5, 页码: 794-799
作者:  Li, Ziguang;  Huang, Chao;  Wang, Xuliang;  Hu, Haibo;  Wyeth, Cole;  Bu, Dongbo;  Yu, Quan;  Gao, Wen;  Liu, Xingwu;  Li, Ming
收藏  |  浏览/下载：33/0  |  提交时间：2025/06/25
Cost-Effective DNA Storage System with DNA Movable Type 期刊论文
ADVANCED SCIENCE, 2024, 页码: 15
作者:  Wang, Chenyang;  Wei, Di;  Wei, Zheng;  Yang, Dongxin;  Xing, Jing;  Wang, Yunze;  Wang, Xiaotong;  Wang, Pei;  Ma, Guannan;  Zhang, Xinru;  Li, Haolan;  Tang, Chuan;  Hou, Pengfei;  Wang, Jie;  Gao, Renjun;  Xie, Guiqiu;  Li, Cuidan;  Ju, Yingjiao;  Wang, Peihan;  Yue, Liya;  Zhao, Yongliang;  Sheng, Yongjie;  Xiao, Jingfa;  Niu, Haitao;  Xu, Sihong;  Yang, Huaiyi;  Liu, Di;  Duan, Bo;  Bu, Dongbo;  Tan, Guangming;  Chen, Fei
收藏  |  浏览/下载：48/0  |  提交时间：2025/06/25
DNA data storage  DNA movable type  DNA-based storage  
GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states 期刊论文
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:  Liu, Fan;  Zhou, Han;  Li, Xiaonong;  Zhou, Liangliang;  Yu, Chungong;  Zhang, Haicang;  Bu, Dongbo;  Liang, Xinmiao
收藏  |  浏览/下载：53/0  |  提交时间：2024/12/06
G-protein coupled receptor  State-specific structure  Binding site  Key residue  Database  
NIERT: Accurate Numerical Interpolation Through Unifying Scattered Data Representations Using Transformer Encoder 期刊论文
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2024, 卷号: 36, 期号: 11, 页码: 6731-6744
作者:  Ding, Shizhe;  Xia, Boyang;  Ren, Milong;  Bu, Dongbo
收藏  |  浏览/下载：32/0  |  提交时间：2025/06/25
Interpolation algorithm  pre-trained models  scattered data  transformer encoder  
Accurate and robust protein sequence design with CarbonDesign 期刊论文
NATURE MACHINE INTELLIGENCE, 2024, 卷号: 6, 期号: 5, 页码: 14
作者:  Ren, Milong;  Yu, Chungong;  Bu, Dongbo;  Zhang, Haicang
收藏  |  浏览/下载：101/0  |  提交时间：2024/12/06
Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials 期刊论文
COMMUNICATIONS BIOLOGY, 2024, 卷号: 7, 期号: 1, 页码: 13
作者:  Gong, Tiansu;  Ju, Fusong;  Bu, Dongbo
收藏  |  浏览/下载：57/0  |  提交时间：2024/05/20