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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：10/0  |  提交时间：2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem? 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2022, 卷号: 44, 期号: 10, 页码: 6695-6714
作者:  Ma, Jun;  Zhang, Yao;  Gu, Song;  Zhu, Cheng;  Ge, Cheng;  Zhang, Yichi;  An, Xingle;  Wang, Congcong;  Wang, Qiyuan;  Liu, Xin;  Cao, Shucheng;  Zhang, Qi;  Liu, Shangqing;  Wang, Yunpeng;  Li, Yuhui;  He, Jian;  Yang, Xiaoping
收藏  |  浏览/下载：37/0  |  提交时间：2022/12/07
Benchmark testing  Liver  Image segmentation  Biological systems  Pancreas  Computed tomography  Kidney  Multi-organ segmentation  generalization  semi-supervised learning  weakly supervised learning  continual learning  
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
Market-oriented job skill valuation with cooperative composition neural network 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 12
作者:  Sun, Ying;  Zhuang, Fuzhen;  Zhu, Hengshu;  Zhang, Qi;  He, Qing;  Xiong, Hui
收藏  |  浏览/下载：36/0  |  提交时间：2021/12/01
ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Protein structure  Secondary structure elements  Inter-SSE contacts  
Information retrieval: a view from the Chinese IR community 期刊论文
FRONTIERS OF COMPUTER SCIENCE, 2020, 卷号: 15, 期号: 1, 页码: 15
作者:  Chen, Zhumin;  Cheng, Xueqi;  Dong, Shoubin;  Dou, Zhicheng;  Guo, Jiafeng;  Huang, Xuanjing;  Lan, Yanyan;  Li, Chenliang;  Li, Ru;  Liu, Tie-Yan;  Liu, Yiqun;  Ma, Jun;  Qin, Bing;  Wang, Mingwen;  Wen, Jirong;  Xu, Jun;  Zhang, Min;  Zhang, Peng;  Zhang, Qi
收藏  |  浏览/下载：69/0  |  提交时间：2020/12/10
information retrieval  redefinition  information  scope of retrieval  retrieval models  users  system architecture  evaluation  
Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis 期刊论文
JOURNAL OF PROTEOMICS, 2020, 卷号: 217, 页码: 7
作者:  Wang, Hui;  Zhang, Jingwei;  Dong, Junchuan;  Hou, Meijie;  Pan, Weiyi;  Bu, Dongbo;  Zhou, Jinyu;  Zhang, Qi;  Wang, Yaojun;  Zhao, Keli;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：68/0  |  提交时间：2020/12/10
Multi-stage mass spectrometry  Glycan branching pattern  Glycan identification  Spectra tree  Isomeric glycan  
基于知识图谱的推荐系统研究综述 期刊论文
中国科学:信息科学, 2020, 卷号: 50.0, 期号: 007, 页码: 937
作者:  秦川;  祝恒书;  庄福振;  郭庆宇;  张琦;  张乐;  王超;  陈恩红;  熊辉
收藏  |  浏览/下载：33/0  |  提交时间：2023/12/04
知识图谱  推荐系统  协同过滤  异质信息网络  图嵌入  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning (vol 20, 537, 2019) 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 5
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：51/0  |  提交时间：2020/12/10
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：53/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization