中国科学院计算技术研究所机构知识库

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	PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 23, 期号: 2, 页码: 574-584 作者:  Tarn, Ching;  Wu, Yu-Zhuo;  Wang, Kai-Fei 收藏  |  浏览/下载：2/0  |  提交时间：2024/05/20 mass spectrometry  peptide identification  precursor ion detection  deisotope  linear programming
	Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 22, 期号: 8, 页码: 2593-2607 作者:  Cao, Yong;  Liu, Xin-Tong;  Mao, Peng-Zhi;  Chen, Zhen-Lin;  Tarn, Ching;  Dong, Meng-Qiu 收藏  |  浏览/下载：7/0  |  提交时间：2023/12/04 CXMS  XL-MS  NHS ester cross-linker  pLink  xiSearch  MeroX
	Validation Methods of Peptide Identification Results in Proteomics* 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min 收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	A universal database reduction method based on the sequence tag strategy to facilitate large-scale database search in proteomics 期刊论文 INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2023, 卷号: 483, 页码: 11 作者:  Wang, Kai-Fei;  Wu, Yu-Zhuo;  Chi, Hao 收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
	Recent Progress in Chemical Cross-linking Coupled With Mass Spectrometry 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2022, 卷号: 49, 期号: 4, 页码: 737-758 作者:  Chen Zhen-Lin;  Cao Yong;  He Si-Min 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 cross-linking mass spectrometry  protein structure  protein interaction  proteomics  mass spectrometry
	pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文 JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9 作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao 收藏  |  浏览/下载：31/0  |  提交时间：2022/06/21 Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning
	Confident software-driven identification of intact glycopeptides by integrating complementary peptide- and glycan-first search strategies in efficient mining of MS2 data 期刊论文 GLYCOBIOLOGY, 2021, 卷号: 31, 期号: 12, 页码: 1725-1726 作者:  Chien, Yu-Chun;  Kuo, Chu-Wei;  Zeng, Wen-Feng;  Khoo, Kay-Hooi 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Synergistic optimization of Liquid Chromatography and Mass Spectrometry parameters on Orbitrap Tribrid mass spectrometer for high efficient data-dependent proteomics 期刊论文 JOURNAL OF MASS SPECTROMETRY, 2020, 页码: 10 作者:  Huang, Peiwu;  Liu, Chao;  Gao, Weina;  Chu, Bizhu;  Cai, Zongwei;  Tian, Ruijun 收藏  |  浏览/下载：62/0  |  提交时间：2020/12/10 chromatography  data-dependent acquisition  label-free proteomics  mass spectrometry  precursor determination algorithm