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AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 2, 页码: 319-328
作者:  Han, Renmin;  Wan, Xiaohua;  Li, Lun;  Lawrence, Albert;  Yang, Peng;  Li, Yu;  Wang, Sheng;  Sun, Fei;  Liu, Zhiyong;  Gao, Xin;  Zhang, Fa
收藏  |  浏览/下载:71/0  |  提交时间:2019/04/03
AutoGDeterm: Automatic Geometry Determination for Electron Tomography 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2018, 卷号: 23, 期号: 4, 页码: 369-376
作者:  Chen, Yu;  Wang, Zihao;  Li, Lun;  Zhang, Jingrong;  Wan, Xiaohua;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:67/0  |  提交时间:2019/12/10
electron tomography  geometry determination  human intervention  full automation  AutoGDeterm  comparable accuracy  
Computer-Aided Detection of Pulmonary Nodules in Computed Tomography Images: Effect on Observer Performance 期刊论文
JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS, 2017, 卷号: 7, 期号: 6, 页码: 1205-1211
作者:  Liu, JiaBao;  Wang, Yu;  Zhang, Fa;  Ren, Fei;  Liu, LiHeng;  He, Wen
收藏  |  浏览/下载:71/0  |  提交时间:2019/12/12
Computer-Aided Detection  Model Learning  Lung Nodule  Computed Tomography  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:51/0  |  提交时间:2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
Live cell single molecule-guided Bayesian localization super resolution microscopy 期刊论文
CELL RESEARCH, 2017, 卷号: 27, 期号: 5, 页码: 713-716
作者:  Xu, Fan;  Zhang, Mingshu;  He, Wenting;  Han, Renmin;  Xue, Fudong;  Liu, Zhiyong;  Zhang, Fa;  Lippincott-Schwartz, Jennifer;  Xu, Pingyong
收藏  |  浏览/下载:55/0  |  提交时间:2019/12/12
A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 2, 页码: 316-325
作者:  Zhang, Fa;  Chen, Yu;  Ren, Fei;  Wang, Xuan;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/12
Particle selection  feature-based  template-matching  rotation-invariant feature  correlation score functions  
ICON: 3D reconstruction with 'missing-information' restoration in biological electron tomography 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 100-112
作者:  Deng, Yuchen;  Chen, Yu;  Zhang, Yan;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载:50/0  |  提交时间:2019/12/13
Compressed sensing  Electron tomography  Missing wedge  NUFFT  Sub-tomogram averaging  
FIRT: Filtered iterative reconstruction technique with information restoration 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2016, 卷号: 195, 期号: 1, 页码: 49-61
作者:  Chen, Yu;  Zhang, Yan;  Zhang, Kai;  Deng, Yuchen;  Wang, Shengliu;  Zhang, Fa;  Sun, Fei
收藏  |  浏览/下载:52/0  |  提交时间:2019/12/13
Algebra reconstruction technique  Electron tomography  Filtered iterative reconstruction technique  Information restoration  Nonlinear diffusion filter  
A novel fully automatic scheme for fiducial marker-based alignment in electron tomography 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2015, 卷号: 192, 期号: 3, 页码: 403-417
作者:  Han, Renmin;  Wang, Liansan;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:46/0  |  提交时间:2019/12/13
Electron tomography  Alignment  Point set registration  Four point invariant  
FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter 期刊论文
BIO-MEDICAL MATERIALS AND ENGINEERING, 2015, 卷号: 26, 页码: S1409-S1415
作者:  Zhou, Ziying;  Li, Yugang;  Zhang, Fa;  Wan, Xiaohua
收藏  |  浏览/下载:41/0  |  提交时间:2019/12/13
electron tomography (ET)  3D reconstruction  iterative method  non-linear anisotropic diffusion (NAD) filter