中国科学院计算技术研究所机构知识库

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限定条件	作者：Chi, Hao    第一作者

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	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文 ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731 作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min 收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
	pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文 BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190 作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min 收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
	pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758 作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16 tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate
	Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics 期刊论文 MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 4, 页码: 773-785 作者:  Yang, Hao;  Li, Yan-Chang;  Zhao, Ming-Zhi;  Wu, Fei-Lin;  Wang, Xi;  Xiao, Wei-Di;  Wang, Yi-Hao;  Zhang, Jun-Ling;  Wang, Fu-Qiang;  Xu, Feng;  Zengt, Wen-Feng;  Overall, Christopher M.;  He, Si-Min;  Chi, Hao;  Xu, Ping 收藏  |  浏览/下载：278/0  |  提交时间：2019/08/16
	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文 NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+ 作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min 收藏  |  浏览/下载：84/0  |  提交时间：2019/08/16
	pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128 作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min 收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10 tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation
	pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning 期刊论文 ANALYTICAL CHEMISTRY, 2017, 卷号: 89, 期号: 23, 页码: 12690-12697 作者:  Zhou, Xie-Xuan;  Zeng, Wen-Feng;  Chi, Hao;  Luo, Chunjie;  Liu, Chao;  Zhan, Jianfeng;  He, Si-Min;  Zhang, Zhifei 收藏  |  浏览/下载：67/0  |  提交时间：2019/12/10