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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:  Wang, Chao;  Wei, Yi;  Zhang, Haicang;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:80/0  |  提交时间:2019/08/16
Protein structure prediction  Energy function  Attraction-basin  Reverse Monte Carlo sampling  Monte Carlo search  Linear program  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/10
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 11
作者:  Gong, Hai'e;  Zhang, Haicang;  Zhu, Jianwei;  Wang, Chao;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/12
Protein structure  Burial states of residue  Conditional random field  Residue correlation  
Insights into the transmission of respiratory infectious diseases through empirical human contact networks 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 11
作者:  Huang, Chunlin;  Liu, Xingwu;  Sun, Shiwei;  Li, Shuai Cheng;  Deng, Minghua;  He, Guangxue;  Zhang, Haicang;  Wang, Chao;  Zhou, Yang;  Zhao, Yanlin;  Bu, Dongbo
收藏  |  浏览/下载:66/0  |  提交时间:2019/12/13
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:  Zhang, Haicang;  Gao, Yujuan;  Deng, Minghua;  Wang, Chao;  Zhu, Jianwei;  Li, Shuai Cheng;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:61/0  |  提交时间:2019/12/13
Protein contacts prediction  Correlation analysis  Background correlation removal  Low-rank and sparse matrix decomposition  
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 3, 页码: 462-464
作者:  Wang, Chao;  Zhang, Haicang;  Zheng, Wei-Mou;  Xu, Dong;  Zhu, Jianwei;  Wang, Bing;  Ning, Kang;  Sun, Shiwei;  Li, Shuai Cheng;  Bu, Dongbo
收藏  |  浏览/下载:51/0  |  提交时间:2019/12/13